Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0382 ATGTGTGGAGGTGCTATCATCTCTGATTTCATACCTCGCAACCGGAACCGCCGCGACCCAGCCCCAGACCTCTGGCCGGACTCTTTCTTCGCTAAACCCGATGGCTGTGAATACGATTTGGGCCGCTTTAGCCAGAAGGGGCTTCCTAATCTGAAAAGGTCTCAACCCATTTTGGATGATGAGCCAGAAGTGAAGCCGGCTAAGAGGGTGAGGAAGAATCTGTACAGGGGGATCCGGCAGCGTCCTTGGGGAAAATGGGCGGCTGAGATTCGTGATCCCAGTAAAGGGGTTCGGGTTTGGCTCGGGACCTTCAACACTGCGGAAGAAGCTGCGAGAGCTTACGACAGGGAGGCTCGGAAAATTCGGGGGAAGAAAGCAAAGGTTAACTTCCCCAATGAAGACGATGACTACACTGAGAATCACCAAAATCACCGTGCTCTACCAACTCGCTGGAACTCCAATCCTTCTATTTGTCAGCCCTATACCCCAAATTTCTCAAAAAGTTTGGGTTTTGCTGATCACTTGAACCAGATTGGAGCATTCCCCTCCAATGGGTTCAACACCGTTGGTGCTATGAACGCTAACCCGGTTGCTGTCACAACCGAAGTGAAATACGGCTCTGATTCGGAGTCTGTGTACCCTTCCTCTGGATTGTTGAATTGCAATCAGAAAGCCTGTGTTGGGAAAGTGAAAAATCAGAAAGAGAACCAAACAGAGACTGTGACGGAAGCTGAGAAGGAGGAAATGGAAGTGCAGAAGCTGTCGGAGGAGCTAATGGCGTATGAGTCGGTCATGAAGTTCTATCAGATCCCCTATCTCGACGGCAACTCAGCCGCGGTTCCCAACGCTGCTCAGGAAAATGCTGGTGCTTGCGGTGGTGCTGCCATGGAAGCTCTTTGGAGCTTTGATGAATTTGCAGTTGCTCCTCAACCCACCTCAGCTGCTCTATAA 951 0.5089 MCGGAIISDFIPRNRNRRDPAPDLWPDSFFAKPDGCEYDLGRFSQKGLPNLKRSQPILDDEPEVKPAKRVRKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDDYTENHQNHRALPTRWNSNPSICQPYTPNFSKSLGFADHLNQIGAFPSNGFNTVGAMNANPVAVTTEVKYGSDSESVYPSSGLLNCNQKACVGKVKNQKENQTETVTEAEKEEMEVQKLSEELMAYESVMKFYQIPYLDGNSAAVPNAAQENAGACGGAAMEALWSFDEFAVAPQPTSAAL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0382 316 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Vvi7g0382 316 FunFam Ethylene-responsive transcription factor 2 73 132 - -
Vvi7g0382 316 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Vvi7g0382 316 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Vvi7g0382 316 PANTHER DNA-BINDING DOMAIN 65 256 IPR044808 GO:0003700|GO:0009873
Vvi7g0382 316 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Vvi7g0382 316 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Vvi7g0382 316 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Vvi7g0382 316 Coils Coil 227 264 - -
Vvi7g0382 316 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Vvi7g0382 316 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0382 Vvi-Chr7 3447232 3448265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0382 1 132 AP2-EREBP Transcription Factor Family AT2G47520 56.818 8.79e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g0382 AP2 9.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0382 K09286 - vvi:100252208 631.713