Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0372 ATGTACAACCACAGAGCAAGAGCTAAATTCTTGCTGTCTCTTCTCTCCATTTCCGCCTTTGCTTTTCTCCTACTCACCACAGTGAAACCTCTGAAAAAGAGCCCAAAAAACACTGAAATCCCGCAACTGCATCTCCACAAGCATGTCCAGATTGCCCATTCCCATTGCGAAGGCACTCTCTATCCAGAGCTCTGTGTCTCAACTCTCTCCACATTCCCGGATCTTGCGTCTAAAACTGTCCCGGAAGTCATCGCTGCTACAGTGAGCCACACAGTGGGCGAAGTTAAGTTGTCAGCCTCGAACTGCAGCGGCATTCGGAGGAAGCTCAAGAACCTCAACACCCTTGAAGGCAGAGCTATCAACGACTGCCTTGAGCTCCATGACTGCACCATTGCTCAGCTTCAGTCCACTATTTCTGATCTTTCTCACAATAACTCGCCCGCAAAGCATTACCATGACTTGCAGACGTTGTTGAGCGGTTCGATAACGAATCTCTACACTTGTCTTGATGGGTTTGCTTACAGTAAAAAGCACATTCGGAGTTCAATCGAAGGCCCTCTCCGCAACATCTCTCACCATGTCAGTAACTCTCTGGCAATGCTCAAGAAAATCCCAGGAGTCCAGTCATCGAAGTCTGAGATTTTCCCGGAGTACGGTAGCACGAAGGATGGTTTTCCGGCGTGGCTGTCCGGGAAGGACAGGAGACTGTTGCAGGCGTCGGCGAGTCAAATTCATTACAATCTCACCGTGGCCAAGGATGGCAGTGGAGACTTCACCACCATTGGGGAAGCCATTGCAGCTGCTCCCAACTCCAGCACTACCAGGTTTGTGATACATATAAAGGCAGGTGCTTACTTTGAGTACTTAGATATTGCGAGGTCGAAGACGATGCTGATGTTGGTGGGAGACGGGCTCGAGAATACTTACATCAAGGGCAACCGAAGTGTGGGTGGTGGGTGGACCACTTTCCAATCGGGCACTGTCGCCGTGGTGGCAAACAATTTCATAGCCAAAGGCATCTCCTTCGAGAACTACGCAGGGCCGAGCAATCACCAAGCAGTGGCCCTGAGGAGTGGAGCCGACCTCTCCGTCTTCTACCTGTGCCGCTTCATCGGTTACCAAGACACCCTCTACGTCCACTCTCTCCGCCAATTCTACCGTGAATGCGACGTCTACGGAACCATAGATTTCATCTTCGGAAACGCTGCAGTCGTTCTCCAAAACTGCAACTTATACGCCCGCAGACCTAACGCAAACCAGAAAAATGTCTTCACCGCCCAAGGGAGAGATGACCCCAACGAAAACACCGGAATCTCAATACAAAATTGCAAAGTCGCTGCGGCTGCGGACTTGATTCCGGTCCTATCTTCATTCAAATCGTACCTAGGAAGGCCATGGAAGGAGTATTCGAGGACGGTTTATATGCAGTCTAACATTGGCAATTTGATTGACCCAGCTGGGTGGCTGGAGTGGGATGGAGATTTTGCATTGAGTACTCTTTATTATGGTGAGTATAAGAACCGGGGTCCAGGTTCCAACACCAGCGGCAGGGTGACATGGCCGGGTTATAGAGTTATTAATAGTTCGAGTGTGGCGAGTCAGTTCACTGTTGGGGCCTTCATTCAGGGAGATGAATGGCTTCCAGCTACTGGGATTCCTTATTATTCCAATTTGACCATCGTTTAG 1686 0.5 MYNHRARAKFLLSLLSISAFAFLLLTTVKPLKKSPKNTEIPQLHLHKHVQIAHSHCEGTLYPELCVSTLSTFPDLASKTVPEVIAATVSHTVGEVKLSASNCSGIRRKLKNLNTLEGRAINDCLELHDCTIAQLQSTISDLSHNNSPAKHYHDLQTLLSGSITNLYTCLDGFAYSKKHIRSSIEGPLRNISHHVSNSLAMLKKIPGVQSSKSEIFPEYGSTKDGFPAWLSGKDRRLLQASASQIHYNLTVAKDGSGDFTTIGEAIAAAPNSSTTRFVIHIKAGAYFEYLDIARSKTMLMLVGDGLENTYIKGNRSVGGGWTTFQSGTVAVVANNFIAKGISFENYAGPSNHQAVALRSGADLSVFYLCRFIGYQDTLYVHSLRQFYRECDVYGTIDFIFGNAAVVLQNCNLYARRPNANQKNVFTAQGRDDPNENTGISIQNCKVAAAADLIPVLSSFKSYLGRPWKEYSRTVYMQSNIGNLIDPAGWLEWDGDFALSTLYYGEYKNRGPGSNTSGRVTWPGYRVINSSSVASQFTVGAFIQGDEWLPATGIPYYSNLTIV* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0372 561 Pfam Plant invertase/pectin methylesterase inhibitor 53 200 IPR006501 GO:0004857
Vvi7g0372 561 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Vvi7g0372 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 206 IPR035513 -
Vvi7g0372 561 PANTHER PECTINESTERASE 28 548 - -
Vvi7g0372 561 SUPERFAMILY Pectin lyase-like 242 556 IPR011050 -
Vvi7g0372 561 FunFam Pectinesterase 241 558 - -
Vvi7g0372 561 NCBIfam pectinesterase inhibitor domain 17 203 IPR006501 GO:0004857
Vvi7g0372 561 CDD PMEI-like_3 54 206 - -
Vvi7g0372 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 205 IPR035513 -
Vvi7g0372 561 Gene3D - 240 558 IPR012334 -
Vvi7g0372 561 SMART PMEI_2 47 200 IPR006501 GO:0004857
Vvi7g0372 561 FunFam Pectinesterase 49 206 - -
Vvi7g0372 561 Pfam Pectinesterase 247 544 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0372 Vvi-Chr7 3365467 3368103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0372 76 558 Carbohydrate Esterase AT4G02320 53.427 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0372 K01051 - vvi:100245304 1126.31