Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0371 ATGGAAGTTGACTTCACAATACAAACCCCTCAAGTATTCTCTACCAAAATCAAATTAATAAGAATAACCCAACCACCTTATGTCTCTCAAATCTTCTATATAATGGCCTCAACCATCATGCAACATTCCCCATCAACTCATCGACTCTCCCTCTCCCCCTCCCTCTATTCCATGACCATGTCTTCTTCTAAGCTTTCGTTGTCCCTCGTTGCTTTCTCAGCCATTGTCATTTTCCTTGCTCTTTTCTCATCGACATCTCTAGCAGATGACTCCATATGTCAGTCCACACCTGACCCTTCCTCTTGCAAAGGCCTTGTCCAGAGCAACAAATCCGCAAATGTTTACGATTATGGAAGGTCATCTTTGAAGAAGTCGATAGCGACTTCGCGTAAGTTCTTGTCCCTGGTTGACAAGTACCTCAGTGCCCGGTCCAATTTGTCGGCCGCTGCGGTTCGGGCGCTGCAGGACTGTCGCTTTCTAGGAGGACTAAACTTGGATTACTTGTTGAGCTCTTCTCAAGTTGCGGATGCTAATTCTAAAATCCTGTCTGTTCTGGAAGCTGATGATGTGCAAACCTTGCTTAGTGCCCTTTTAACTAACCAGCAAACATGCTTGGATGGTCTGCAAGAGACCTCTTCTTCATGGAGTGTGAAGAACGGTGTTTCAACTCCCCTGTCCAATGACACTAAGCTCTATAGAGTTTCTCTATCCCTCTTCACCAAGGGTTGGGTTCCCAAGCAGAAGAAGGGGAAAGTGGTGAAAGCTAGGAAGCATCTCCCCTTTGGAAATGGGCGCTTGCCCTTGAAAATGTCTAGCCAAAACCGAAAACTCTACGAGTCTTTGAGTAACAGGAAGTTGCTGGACACCGGTAATGATCAGGTTTCGATAAGCGACATCGTGACGGTGAACCAGGATGGGAGTGGAAATTTCGCGACCATTAATGATGCCATAGCTGTAGCTCCAAACAATACCGATGGCAGCAATGGATACTTTGTGATTTACATCCAGGCCGGAGTCTACGAAGAGTACGTATCCATCGCTAAGAATAAGAAGTACTTGATGATGATCGGTGATGGCATCAACCAGACTGTGATCACCGGAAACAGAAGCGTGGTTGATGGATGGACAACTTTCAACTCCGCCACATTTGCTGTGGTGGCACAAGGATTTGTTGCAGTGAACATAACATTCCGGAACACAGCTGGGGCAGCAAAACATCAAGCGGTTGCCCTCCGGAGCGGGGCTGATTTATCAACATTCTACCTGTGCAGCTTTGAAGCCTATCAAGACACCTTATACACCCATTCCCTAAGGCAATTCTACAGAGAATGCGACATATATGGAACGGTTGATTTCATATTTGGCAATGCTGCAGTTGTCTTCCAAAACTGCAACTTATATCCCCGGCTGCCCCTGAGCGGACAGTTCAATGCCATCACCGCCCAAGGCCGGACGGACCCCAATCAGAACACCGGCACCTCAATTCACAACTGTGTCATTCGTGCCGCCGATGATTTGGCTGCAAGCAATGGAACCACAAAGACATACTTGGGAAGGCCATGGAAGGAGTATTCAAGGACAGTGTACATGCAATCAAACATGGGTAGTTTGATTAATCCTTCTGGTTGGAGCATTTGGTCTGGGGATTTTGCTTTAAGTACATTATACTATGCTGAGTACAACAACACCGGACCCGGATCAAACACCAGTAATAGAGTTACATGGTCTGGATACCATGTGATTGGACCTTCTGATGCTGCAAATTTCACTGTCGGCAACTTCCTTCTCGGGGGTGACTGGTTGCCTCAGACTGGGGTGCCTTACACTGGTGGCTTGTTATAA 1842 0.4685 MEVDFTIQTPQVFSTKIKLIRITQPPYVSQIFYIMASTIMQHSPSTHRLSLSPSLYSMTMSSSKLSLSLVAFSAIVIFLALFSSTSLADDSICQSTPDPSSCKGLVQSNKSANVYDYGRSSLKKSIATSRKFLSLVDKYLSARSNLSAAAVRALQDCRFLGGLNLDYLLSSSQVADANSKILSVLEADDVQTLLSALLTNQQTCLDGLQETSSSWSVKNGVSTPLSNDTKLYRVSLSLFTKGWVPKQKKGKVVKARKHLPFGNGRLPLKMSSQNRKLYESLSNRKLLDTGNDQVSISDIVTVNQDGSGNFATINDAIAVAPNNTDGSNGYFVIYIQAGVYEEYVSIAKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVAQGFVAVNITFRNTAGAAKHQAVALRSGADLSTFYLCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPLSGQFNAITAQGRTDPNQNTGTSIHNCVIRAADDLAASNGTTKTYLGRPWKEYSRTVYMQSNMGSLINPSGWSIWSGDFALSTLYYAEYNNTGPGSNTSNRVTWSGYHVIGPSDAANFTVGNFLLGGDWLPQTGVPYTGGLL* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0371 613 FunFam Pectinesterase 293 612 - -
Vvi7g0371 613 CDD PMEI-like_3 91 243 - -
Vvi7g0371 613 PANTHER PECTINESTERASE 76 602 - -
Vvi7g0371 613 Gene3D - 293 612 IPR012334 -
Vvi7g0371 613 SUPERFAMILY Pectin lyase-like 297 611 IPR011050 -
Vvi7g0371 613 FunFam Pectinesterase 90 241 - -
Vvi7g0371 613 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 90 241 IPR035513 -
Vvi7g0371 613 Gene3D Invertase/pectin methylesterase inhibitor family protein 90 241 IPR035513 -
Vvi7g0371 613 Pfam Plant invertase/pectin methylesterase inhibitor 91 237 IPR006501 GO:0004857
Vvi7g0371 613 SMART PMEI_2 83 238 IPR006501 GO:0004857
Vvi7g0371 613 Pfam Pectinesterase 300 597 IPR000070 GO:0030599|GO:0042545
Vvi7g0371 613 ProSitePatterns Pectinesterase signature 2. 446 455 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0371 Vvi-Chr7 3356324 3358272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0371 75 613 Carbohydrate Esterase AT1G02810 63.874 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0371 K01051 - vvi:100258932 1074.69