Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0370 ATGGATGATAACACAAGTGGAATTTCAAAGGGCCGTGCTCCGTCCAGCTATGCTCTTAGTGGAAAAGTTATGCTGAGTTCAGTTGTTATTCTCTTCACTGTTGTTGCTGTCATTGTTTTTTTCCATTCTTATGCCCGGTGGTTGCTCAGTCGTGACCGGACTAGACGTCACCTCCGCCGCCGTAGCCGTATCCGCTTTGACTCGGACCGCACCACCGCCGTATCCGCCGTCGACGGTGTCGTTGACCAGGGTCTCGACGTCTCCATCCTCAAGTCTCTTCCGACTTTTGTCTACTCAAAGGCCACTCACGGCCCAATTTTAGAATGCGCCGTCTGCTTATCGGAGTTTGAAGATGACGAGAAAGGCCGCGTTTTGCCGAAATGTAACCACTGCTTCCACAATGACTGCATCGACATGTGGTTCCACTCTCACTCCAATTGCCCACTCTGCAGAGCCCTTGTTCCGCTCCACCTTCCATCCCCGCCCGAAACAGTCGTACCGGTTCTCGAACCAGCCGGAACGGAGACGATCTCCGGAGCTTCTCCCCGGTGCCCAAGGGATGATGATGAAAACGAAACGGGTCCATCTTCTTCATTGACTCCGGGGACGTTGACGCTGTTGGAGTGCCCAAGGAAGCCACTGGAGCTGGTGGGTATAACGGTGGAGATGCCGGCCATGAGAGCAGGGGGGTGTAGAGGCTTGGAAGAGGTGGAGTTGGGAACAACGGAGAGCCAATCGTCGAAGTCGCCGGGAAGTCGGATCCTGTCGTTGAAGAGGATTTGGAGCACATAA 792 0.5429 MDDNTSGISKGRAPSSYALSGKVMLSSVVILFTVVAVIVFFHSYARWLLSRDRTRRHLRRRSRIRFDSDRTTAVSAVDGVVDQGLDVSILKSLPTFVYSKATHGPILECAVCLSEFEDDEKGRVLPKCNHCFHNDCIDMWFHSHSNCPLCRALVPLHLPSPPETVVPVLEPAGTETISGASPRCPRDDDENETGPSSSLTPGTLTLLECPRKPLELVGITVEMPAMRAGGCRGLEEVELGTTESQSSKSPGSRILSLKRIWST* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0370 263 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vvi7g0370 263 SMART ring_2 109 150 IPR001841 -
Vvi7g0370 263 CDD RING-H2_EL5-like 108 151 - -
Vvi7g0370 263 SUPERFAMILY RING/U-box 89 163 - -
Vvi7g0370 263 Pfam Ring finger domain 108 151 IPR001841 -
Vvi7g0370 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 156 IPR013083 -
Vvi7g0370 263 MobiDBLite consensus disorder prediction 174 203 - -
Vvi7g0370 263 FunFam E3 ubiquitin-protein ligase ATL6 73 156 - -
Vvi7g0370 263 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 154 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0370 Vvi-Chr7 3351619 3352410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0370 2 262 Rapid Response to Elicitors AT3G16720 42.606 5.83e-49 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0370 - - vvi:100855330 495.352