Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0364 ATGGCGGAGTTGAATACAGGCGGCGAGATTTCTCCGAACATGACCATTTACATTAACAATCTCAACGAGAAAATCAAACTAGAAGAGTTGAAGAAATCGCTTTTCGCCGTGTTCTCTCAGTTCGGAAAAATAATGGAAGTTTTAGCATTCAAGACATTGAAACACAAGGGCCAAGCTTGGGTCGTTTTCGAGGAAGTCTCGTCCGCCACCAATGCGCTCAGGCAAATGCAGGGCTTCCCTTTTTATGATAAGCCCATGAGAATACAATATGCAAAGACAAAATCAGATGTCATAGCAAAGGCAGATGGTACCTTTGTCCCACGAGAAAGGCGAAGGAGGCATGATGACAGAGCTGGGAGAAAGCGAAGAGAACAACATGATGCTAACCAAGCTGGAGTGGGTGTCAATCCTGCTTATGGTGGTGCCTATGGCGCAGCCCCTCCTCTGTCTCAGATACCATATCTGGGTGGTGCAAAATCTGCAGTTCCTGAAGCTCCTGCTCCTCCAAATAACATACTCTTCATTCAGAATCTTCCCCATGAGGCAACACCGATGATGCTGCAAATGTTTTTCTGCCAATACCCAGGTTTTAAGGAAGTTAGAATGGTGGAAGCAAAGCCAGGGATTGCCTTTGTGGAGTATGGGGATGAGATGCAGTCGACAGTTGCTATGCAAGGGCTTCAAGGTTTGAAGATAAACCAACAGAATCCAATGTTGATTACCTATGCAAAGAAATAG 738 0.4539 MAELNTGGEISPNMTIYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRRRHDDRAGRKRREQHDANQAGVGVNPAYGGAYGAAPPLSQIPYLGGAKSAVPEAPAPPNNILFIQNLPHEATPMMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLITYAKK* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0364 245 Gene3D - 159 245 IPR012677 -
Vvi7g0364 245 FunFam U2 small nuclear ribonucleoprotein B'' 162 245 - -
Vvi7g0364 245 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 81 245 - -
Vvi7g0364 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 245 IPR000504 GO:0003723
Vvi7g0364 245 CDD RRM1_U1A_like 15 92 - -
Vvi7g0364 245 SUPERFAMILY RNA-binding domain, RBD 12 236 IPR035979 GO:0003676
Vvi7g0364 245 MobiDBLite consensus disorder prediction 107 131 - -
Vvi7g0364 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Vvi7g0364 245 SMART rrm1_1 15 89 IPR000504 GO:0003723
Vvi7g0364 245 SMART rrm1_1 172 241 IPR000504 GO:0003723
Vvi7g0364 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 235 IPR000504 GO:0003723
Vvi7g0364 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Vvi7g0364 245 Gene3D - 8 102 IPR012677 -
Vvi7g0364 245 CDD RRM2_U1A_like 169 241 - -
Vvi7g0364 245 FunFam U1 small nuclear ribonucleoprotein A 8 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0364 Vvi-Chr7 3312152 3316309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0364 5 105 Eukaryotic Initiation Factors Gene Family AT2G23350 27.184 5.75e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0364 K11091 - vvi:100243572 446.817