Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0355 ATGAGTCGCGGCACAGCATCTGGGCCGAAGGGCAAGAAGAAGAGTGCGACGTTCACGATCGACTGCTCCAAACCAGTGGAGGATAAGATCATGGACGTCGCATCACTAGAAAAGTTCCTCCAGGAGCGAATCAAGGTCGGCGGCAAGGCCGGCGCTCTCGGTGACTCCGTCACCGTCACCCGCGAGAAGAGCAAGATCACCGTTACCTCCGATAGCAACCTCTCTAAACGATTGGGGCTATTTCTCAGTAAGGAAGAGCGCCTTTTTTAG 270 0.5481 MSRGTASGPKGKKKSATFTIDCSKPVEDKIMDVASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNLSKRLGLFLSKEERLF* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0355 89 Pfam Ribosomal L22e protein family 13 82 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vvi7g0355 89 PANTHER 60S RIBOSOMAL PROTEIN L22 5 83 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vvi7g0355 89 FunFam 60S ribosomal protein L22-2 5 87 - -
Vvi7g0355 89 Gene3D - 5 85 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0355 Vvi-Chr7 3240109 3240788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0355 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 80.519 4.91e-40 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0355 K02891 - vvi:100258955 153.295