Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0353 ATGTCTGGAGATGAATCTGTTATGGTTGAGGCTGCTGGTGCCCCTCCAGGTGAGACCTTGGACCTCATGACAGCCTTGCAACTTGTCCTGAGGAAATCATTGGCTAATGGTGGACTTGTACGAGGCCTCCATGAAGGTGCTAAGGCGATTGAGAAACATGCTGCCCAGCTCTGTGTATTGGCAGAGGACTGCAACCAGCCTGACTATATTAAACTCGTCAAAGCGCTTTGTGCTGACCATAATATCAGCCTTATATCAGTGCCTAGTGCTAAAACTCTTGGTGAATAG 288 0.4826 MSGDESVMVEAAGAPPGETLDLMTALQLVLRKSLANGGLVRGLHEGAKAIEKHAAQLCVLAEDCNQPDYIKLVKALCADHNISLISVPSAKTLGE* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0353 95 Gene3D - 5 95 IPR029064 -
Vvi7g0353 95 PANTHER 40S RIBOSOMAL PROTEIN S12 14 95 - -
Vvi7g0353 95 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 25 95 IPR004038 -
Vvi7g0353 95 SUPERFAMILY L30e-like 20 95 IPR029064 -
Vvi7g0353 95 PRINTS Ribosomal protein S12E family signature 84 95 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vvi7g0353 95 PRINTS Ribosomal protein S12E family signature 29 42 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vvi7g0353 95 PRINTS Ribosomal protein S12E family signature 43 59 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vvi7g0353 95 ProSitePatterns Ribosomal protein S12e signature. 25 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0353 Vvi-Chr7 3232534 3232821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0353 18 95 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.641 1.02e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0353 K02951 - vvi:100265590 175.252