Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0331 ATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATCTCCCTGGTGACATTCGAGAGAGAGAAGTAGAAGACCTGTTTTATAAGTATGGGCCTATAGCTCACATTGATCTGAAAATCCCCCCTAGACCCCCTGGCTATGCATTTGTTGAGTTTGAAGAGTCTCGTGATGCTGAAGATGCTATTCGAGGTCGTGATGGTTATGATTTTGATGGGCACCGATTGCGGGTGGAACTGGCACATGGTGGGCGTGGACATTCATCATCAATAGATCGGCATAGTCATAGCAGTGGTCGAGGTGGCCGGGGTGGAGCATCTAGGCGCTCTGAATACCGTGTGTTAGTCACTGGATTACCCTCTTCTGCTTCGTGGCAAGACTTAAAGGATCACATGCGCCGTGCAGGGGATGTTTGTTTCTCTCAAGTTTTCCATGATGGTGGTGGTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATATGTTCGAGTGAAGGAATATGATTCGAGCCGGAGCTTTTCTAGGAGTCGCAGTCGATCCTACTCAAGGGGCAAGAGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAGCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTCTTCACGTTCTCACTCTGGGTCAAAGCCACGCTCTTTGTCAGGCGATCTGGGATTGCATATTAGGATCTTGATGGGATATGATTCAAATGCCTGCAACTCTTTTGGTTGTGGAGATTGGGAACAAAGGAGATCATGGATTGCGATAGTAAAGCTGGATTACTGTGAACTAAGTGCCATTGGGATTTGGGAATCCACCTTCAATGAGCGGTAG 927 0.48 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAIRGRDGYDFDGHRLRVELAHGGRGHSSSIDRHSHSSGRGGRGGASRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFHDGGGTVGIVDYTNYDDMKFAIRKLDDSEFRNAFSRAYVRVKEYDSSRSFSRSRSRSYSRGKSASRSRSRSYSRSRSQSKSPKAKSSRRSRSRSVSSRSHSGSKPRSLSGDLGLHIRILMGYDSNACNSFGCGDWEQRRSWIAIVKLDYCELSAIGIWESTFNER* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0331 308 Gene3D - 1 110 IPR012677 -
Vvi7g0331 308 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 244 - -
Vvi7g0331 308 MobiDBLite consensus disorder prediction 195 251 - -
Vvi7g0331 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vvi7g0331 308 CDD RRM2_SF2_plant_like 111 186 - -
Vvi7g0331 308 SMART rrm1_1 112 183 IPR000504 GO:0003723
Vvi7g0331 308 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vvi7g0331 308 CDD RRM1_SF2_plant_like 8 79 - -
Vvi7g0331 308 MobiDBLite consensus disorder prediction 224 238 - -
Vvi7g0331 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Vvi7g0331 308 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Vvi7g0331 308 SUPERFAMILY RNA-binding domain, RBD 6 178 IPR035979 GO:0003676
Vvi7g0331 308 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Vvi7g0331 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Vvi7g0331 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vvi7g0331 308 Gene3D - 111 188 IPR012677 -
Vvi7g0331 308 MobiDBLite consensus disorder prediction 81 98 - -
Vvi7g0331 308 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0331 Vvi-Chr7 3096828 3101197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0331 11 80 Eukaryotic Initiation Factors Gene Family AT3G11400 35.616 6.17e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0331 K12890 - vvi:100255499 350.517