Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0288 ATGAAGGGTACCCTAGCAAGGCATTTGACGGTTCAGCTAGGTCAAGTTTCTCGCTGCCAGAACCTTCTGGAATCGGAATCCACCGTCGATAACATCGACGCTGATGTCGACGACAAAGATTTCATTCTCAGCCAAGACTTCTTCTGCACTCCTGACTACATCACTCCTGATGGTCAAAATATTTTGAATGGTCTGGATTGCAACAAGGATAACATCCCGTGCCCCAAGTCTCCGGAGAAGCTAAAGACTTCAAGAATCAAAAGGAAGAGAGAGGATGATACCTTATTAGATTCTCCCAATTCCACCTTGTTTGATCAACCAATATTGGAGCTAGAAAAAGACACTTTTGGTACGGATGAAGTTAAGGTGGAGAAAGCAATAGTAACTGGATCACAAAAGAATCAAAGTTATGTTTCACAATCTGCAGTTGCCTTACGGTGTCGGGTTATGCCCCCTCCTTGCTTAAAGAACCCATATCTGAAGAATGCTTCTGAAACTGACATAGATCCTTTTGGAAATCGAAGATCAAAATATTCAGGTTTTTTCCCTGCACTTATTGGTGGAGATGGCCTTTCCCGATATCACACAGATTTCCATGAGATTGAGCAAATTGGTGATGGGAACTTCAGTCGTGTTTTCAAGGTTCTGAAGAGAATTGATGGTTGCATGTATGCAGTGAAACATAGCACAAGACCATTGCATCAAGACACAGAAAGGAGGAAAGCTTTGATGGAAGTTCAAGCTTTGGCAGTTTTAGGATCTCATGAAAACATTGTAGGTTACTACACTTCATGGTTTGAAAATGAGAAACTCTATATTCAAATGGAGCTTTGTGATCACAGCTTATCCATCAAGAGATCTTCCCACTTGTTCACAGAAGGGGAAGTCCTGGAAGCTATGCATCAGATTGCCAAGGCCTTGCAATTTACACATGAGAAAGGAATAGCTCACCTAGATGTAAAACCTGATAACATTTATGTCAAAGATGGTGTTTACAAACTTGGTGATTTTGGTTGTGCAACACTTCTTGATAGAAGCCTTCCTATTGATGAAGGTGATGCGCGTTATATGCCACAAGAAATCTTGAATGACAACTACGACCATCTTGACAAGGTTGACATGTTCTCCTTGGGAGCTGCTATCTATGAACTTATTAGAGGCTCACACTTGCCTGAATCAGGATATCAGTTTTTGAATCTTAGAGAGGGAAAACTGCCACTTCTTCCTGGCTATTCTTTGCAATTCCAGAACTTACTCAAGGCAATGCTGGATCCAGATCCAGTTCAGCGGCCTTCAGCTAAAGAACTAGTAGAAAATCCAATTTTTGACAGGCTCCAAAGAAATGCCAAAACCAAGTAA 1359 0.4143 MKGTLARHLTVQLGQVSRCQNLLESESTVDNIDADVDDKDFILSQDFFCTPDYITPDGQNILNGLDCNKDNIPCPKSPEKLKTSRIKRKREDDTLLDSPNSTLFDQPILELEKDTFGTDEVKVEKAIVTGSQKNQSYVSQSAVALRCRVMPPPCLKNPYLKNASETDIDPFGNRRSKYSGFFPALIGGDGLSRYHTDFHEIEQIGDGNFSRVFKVLKRIDGCMYAVKHSTRPLHQDTERRKALMEVQALAVLGSHENIVGYYTSWFENEKLYIQMELCDHSLSIKRSSHLFTEGEVLEAMHQIAKALQFTHEKGIAHLDVKPDNIYVKDGVYKLGDFGCATLLDRSLPIDEGDARYMPQEILNDNYDHLDKVDMFSLGAAIYELIRGSHLPESGYQFLNLREGKLPLLPGYSLQFQNLLKAMLDPDPVQRPSAKELVENPIFDRLQRNAKTK* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0288 452 Gene3D Transferase(Phosphotransferase) domain 1 277 446 - -
Vvi7g0288 452 SMART serkin_6 198 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0288 452 FunFam WEE protein kinase 188 276 - -
Vvi7g0288 452 ProSiteProfiles Protein kinase domain profile. 198 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0288 452 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 95 447 - -
Vvi7g0288 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Vvi7g0288 452 ProSitePatterns Protein kinases ATP-binding region signature. 204 227 IPR017441 GO:0005524
Vvi7g0288 452 SUPERFAMILY Protein kinase-like (PK-like) 191 445 IPR011009 -
Vvi7g0288 452 Pfam Protein kinase domain 198 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0288 452 Gene3D Phosphorylase Kinase; domain 1 189 276 - -
Vvi7g0288 452 FunFam Wee1-like protein kinase 277 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0288 Vvi-Chr7 2742799 2747173 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0288 1 446 Core Cell Cycle Gene Families AT1G02970 62.208 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Vvi7g0288 Pkinase 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0288 K06632 - vvi:100247725 907.516