Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0279 ATGGTTGATGATATAGGTACTAATGCAGATAGAGACTATGATCATAAGTATAATTATGCAGGTGGTAGCAGTGTTTCGGCTGAGGATGGGATCATCAAGGAACAAGATCGATTGCTGCCGATCGCCAATGTTGGACGGATCATGAAGCAGATCCTGCCACCTAATGCAAAAATCTCCAAGGAAGCAAAAGAAACCATGCAAGAATGTGTCTCGGAGTTCATTAGCTTTGTGACTGGAGAAGCATCTGACAAGTGTCACAAGGAGAAGCGCAAGACTGTCAATGGGGACGACATTTGTTGGGCTTTGGGAACTTTAGGGTTTGATGACTATGCTGAACCGCTTAAAAGGTATTTGCATAGATATAGGGAGTTAGAAGGTGAGAAAGCTAACCAGAGTAAGGCTAGTGAAGAAAATGATGAACCTTCAAATTATAGAGGTGAACCACCAATGAAGCATACAGTTTCACCTGCTCCACTGAAGTTCAATGTGCTTGAGAGGAGTAATAGCTCTCTTTCCAAGCGACTTTAG 528 0.428 MVDDIGTNADRDYDHKYNYAGGSSVSAEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGTLGFDDYAEPLKRYLHRYRELEGEKANQSKASEENDEPSNYRGEPPMKHTVSPAPLKFNVLERSNSSLSKRL* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0279 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi7g0279 175 MobiDBLite consensus disorder prediction 126 146 - -
Vvi7g0279 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Vvi7g0279 175 SUPERFAMILY Histone-fold 35 144 IPR009072 GO:0046982
Vvi7g0279 175 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Vvi7g0279 175 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Vvi7g0279 175 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Vvi7g0279 175 Coils Coil 114 134 - -
Vvi7g0279 175 MobiDBLite consensus disorder prediction 126 175 - -
Vvi7g0279 175 Gene3D Histone, subunit A 28 152 IPR009072 GO:0046982
Vvi7g0279 175 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi7g0279 175 FunFam Nuclear transcription factor Y subunit B-3 27 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0279 Vvi-Chr7 2646221 2646748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0279 28 143 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.586 2.08e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi7g0279 CBFD_NFYB_HMF 1.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0279 K08065 - vvi:104879763 358.607