Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0277 ATGTCAAATATCACAGGAGATGATGGGAGCTTCTCTTCAGGAAACACTGGAGAAGAAGTTCAGCAGCAGCAGCAGCAGCAACAGCCTCAAAATCACCTCCATGGCTCAGGCTTGGGGCCTAATTCAAGTACTGTAACTAACAGCAATGGCTCAAGCTCATCCCAGCAGCAGCAGCAGCAGCAACAACAACAACCCATTAAGAAGAAAAGAAATCTACCAGGAACTCCAGACCCCAATGCTGAAGTTATTGCTTTATCACCCACAACACTGATGGCAACAAACAGATTTGTATGTGAGATATGCAACAAGGGGTTCCAAAGGGACCAAAACCTTCAGTTGCATCGGAGAGGTCATAATCTGCCATGGAAGCTGAGGCAAAGAACAACCAACGAGATCAGGAAAAGAGTCTACATATGCCCCGAGCCATCGTGTGTCCACCACAACCCGGCTCGAGCGCTAGGAGATCTTACAGGAATCAAGAAGCATTACAGCAGGAAGCATGGAGAGAAAAAATGGAAATGTGACAAGTGCTCCAAGAAGTATGCCGTTCAATCCGACTGGAAGGCTCATTCAAAGACCTGTGGTACTAGGGAATACAAATGTGACTGTGGTACCATCTTCTCCAGAAGAGACAGCTTTATCACCCACAGGGCTTTCTGTGATGCATTGGCTGAAGAAAACAACAAAGTAAACCAGGGACTAATGGCTAACATGGGATCAAACTTACAAAGCCAAATGCCTGAGCTCATGTCCTCCATGCCCTTGAACAGCAACTCCAGCCCATCAGTTGGGATATCCGAATTCAACAGCTATGACCCCAAAAACCCACTCAAATCCCTCCCTCAAGACCTTGTGCCCATGCCCTTCAAGTCCCCAAACATGTCAGGAGGCATGTTCTCAAGCAGTTCAGGCACCCTCTTTGGTGGCCCAAGAAGCATATCTTCCTCCTCTTCTGGCCTTCAGCTAAGCTCTAACAGCTCATCCGGCTTCAACTACCTCCAAGACGGTAAAAATGGCACTCAACTATCAGGTTCAGCCAACATGTCCGCCACCGCCTTGCTGCAGAAAGCAGCCCAGATGGGTGCAACTGCAAGCAACAGTATCAACTCCCCCATGATGCAGAAGAGCTTTGTTAGTAGCATGGCAGCACCAGAGCTCTCTTCGATTCGACCATCCCCTTATGTCACAATTCAGCAGCAAACCAACTCATATGATCATCACTTCCAATCTCAGCCTGATCAATCACCTCTAGTTGGGATTAATGGTGGAGGCCTCCCGAGCCAGTTCTTGCAAAAGGGCCCCCCAGAAATCACACCATTGTTTCAAACTGTTTCCGGATCGGCATCAATGAACAATGATATTGGCATGTTTGGTAATGTGTTCATAGGTGGTGATCAAAACTCTCCATTCTTGAAGAACATGGAAAATGAGGATAGTAGTAGTACTTCTAGCCTTGCACAGGGAAGAACAGTGATGGCCCGGAGTGCCACAGGCCCATCAAGGTTCGGAGGGAATGGTGAAGGCAAAGATGTGACAACGCTCGATTTATTGGGGGTTGGAGGATCTAGGCCAGTGAATTTACAAGAGCAGCAGCAGAGGCTGGAGTTGGAGGCAATGAGTCAGCACAGAATGCAAGCGATGACTACTTTCCAGCAACAGCTCTCACATGGGGAACCAGCTATTGAACAAGGCCTATATGGGATTTATGAGTAG 1713 0.4793 MSNITGDDGSFSSGNTGEEVQQQQQQQQPQNHLHGSGLGPNSSTVTNSNGSSSSQQQQQQQQQQPIKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTNEIRKRVYICPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQGLMANMGSNLQSQMPELMSSMPLNSNSSPSVGISEFNSYDPKNPLKSLPQDLVPMPFKSPNMSGGMFSSSSGTLFGGPRSISSSSSGLQLSSNSSSGFNYLQDGKNGTQLSGSANMSATALLQKAAQMGATASNSINSPMMQKSFVSSMAAPELSSIRPSPYVTIQQQTNSYDHHFQSQPDQSPLVGINGGGLPSQFLQKGPPEITPLFQTVSGSASMNNDIGMFGNVFIGGDQNSPFLKNMENEDSSSTSSLAQGRTVMARSATGPSRFGGNGEGKDVTTLDLLGVGGSRPVNLQEQQQRLELEAMSQHRMQAMTTFQQQLSHGEPAIEQGLYGIYE* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0277 570 MobiDBLite consensus disorder prediction 1 69 - -
Vvi7g0277 570 MobiDBLite consensus disorder prediction 1 81 - -
Vvi7g0277 570 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 542 IPR031140 -
Vvi7g0277 570 MobiDBLite consensus disorder prediction 475 494 - -
Vvi7g0277 570 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Vvi7g0277 570 Pfam Zinc finger, C2H2 type 96 118 IPR013087 -
Vvi7g0277 570 FunFam protein indeterminate-domain 12-like 75 143 - -
Vvi7g0277 570 SUPERFAMILY beta-beta-alpha zinc fingers 95 192 IPR036236 -
Vvi7g0277 570 Gene3D Classic Zinc Finger 73 141 - -
Vvi7g0277 570 Gene3D Classic Zinc Finger 151 230 - -
Vvi7g0277 570 MobiDBLite consensus disorder prediction 475 509 - -
Vvi7g0277 570 SMART c2h2final6 96 118 IPR013087 -
Vvi7g0277 570 SMART c2h2final6 172 192 IPR013087 -
Vvi7g0277 570 SMART c2h2final6 137 167 IPR013087 -
Vvi7g0277 570 FunFam protein indeterminate-domain 5, chloroplastic-like 150 229 - -
Vvi7g0277 570 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0277 Vvi-Chr7 2619486 2622309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0277 41 365 IDZ Gene Family AT3G50700 54.391 3.21e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi7g0277 zf-C2H2 0.0059 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0277 - - vvi:100246059 1055.43