Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0276 ATGGTGGAGAGAAGGAAGCCTCTTGTGCTCTCTTCAACCAAAATCCTCCTCGATTCCATACGGAACAGCGCGAGACTCAATAAGAGAGATGGAGTCACTGGAAACGAGTTGTCCGCCAATGAATCGTCGCCGACTCTGCACTTACCGGTGGGAATTCTCCGATTATCGGATGAAAAATCGGTCAGTTCGGACCCAAAGCTGGCTTTGCTCGACGATTCTGCTTTGGTTGGCCTCCCAACGTCTGCTCTCAAGAGGCTCTCCGTAACTTCTGGCTCACCGGTGCTTGTCAGAAATGTTGAGACAAATGTATGGAGAATTGCCCATGTTGTTGTTCTAGATTCTCCTCGCGCCCATGGACACTCATCTGACTCTAAACTACCACTTTCTCATTCTCCCCATACAATGCTTATTTTTCCTTCACTTAAATATCCTCAAAACGACAGTGTGCTTCTGGATGGGGAAGTCGCATATCTATCTCCTCTCCTTGCATTTAACCTTGACTTGCACATATCATGCTTGAAATCTCTTGTACACCAAGGCAAAGAGACTTTAGCATATTTGTTTGAAGCTAAAGCAGATGAGGAGACACGTGGAAGAGGGAGTGAGGCTTCTCCCATTAGTTTAAGCTTGGAACAGAGTGCTCGTTTGCCTAGATTTGCCTCACACTTGAGGGCTTCTTTTGTGAAGATTCCAGAATGTGGTACCCTTGAATCCTTGCAAGGGAATTCATCTATTGAAGCTGAAGATCGTCAGGAGATGATTGATTTGGCTTTGCATAATTACTTTAAAGTAGATAGGTATCTAGCCAGAGGCGATCTTTTCAGTGTTGGTATAAAATGGAATTGCAGATCAGTTATGTGCATTCCTTGCAGCCAAAGGATGCAAAATGCTAGCGATGACATAATCCATTTCAAGGTTGTGGCTATGGAACCAGCAGATGAACCAGTTCTTCGAGTTAATTGCACTCAAACTGCCCTTGTGCTTGGAGGAAGTGTTCCATCAGCTGTTCCACCTGATTTGTTGATTGGAGGATCAAAAGGTTTTATGCCTTTGCAAGCGGATACAGTAAAGATGTTGGCCTCCATACTTACACCACTTGTATGTCCATCAACACTTGCTTCAAAACTCAGAGTCACTGTTCTTTTATACGGTTTGGCAGGAGCTGGGAAGAGGACTGTTATTAGGCATGTTGCTCAAAGGTTGGGTCTGCATATTGTGGAATACAGCTGTCATAATCTGATGTCATCAGCTGAAAGAAAGACATCTGTTGCACTAGCTCAAGTTTTCAATACAGCTCACAGGTACTCACCGACAATACTTCTTCTTCGCCATTTTGATGTGTTCCGAACTCAAGAAGGTTCTTCAAATGATCAAGTTGGCATAGCATCTGAAGTTGCATCTGTTATTAGGAAATTCACTGAGCCAGTAATTGAAGATGAAGACATTTATTCTGAAAAAAAATTAACTAGTGATTTTCAGTTGAAGGATGCTGAAAAGATAAAAAGGCATCAGGTGTTGTTAGTGGCAGCTGCTGACAGTTCTGAAGGTCTACCACCAACTATTAGGCGTTGCTTCAGCCATGAAATAAGAATGGGTCCTTTGACTGAAGAACAAAGGGCTAAAATGCTGTCACAGTCGTTGCAAAGTATTTCTGAACTCCTCCCTAATACTGATTCAGAGGATTTTATAAAGGACATAGTTGGTCAGACATCTGGTTTCATGCTCAGAGATATGCGGGCTTTAATTGCCGATACTGGTGCAAATTTAATGCCCAGGTGTCAAACTAACAAACTTGAGCCTGGAGGCACAGATAATTCTCTAAGGTTCAAAGCAGTGCAAGACACCAAGTCATGCGAAGAAGCACCTCAAGTTCTGGGTAAAGATGACTTGGCCAAAGCATTGGAACGTTCCAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCTAATGTCAAATGGGAAGATGTTGGTGGGCTTGAGGATGTGAAGAAGTCGATTCTAGATACTGTTCAGCTACCTCTCCTTCACAAGGATTTGTTTTCATCCGGGTTGCGTAAGCGCTCTGGTGTTCTTCTTTATGGTCCACCTGGAACAGGGAAAACTTTATTGGCAAAAGCTGTTGCAACAGAGTGCTCCCTCAATTTTCTGAGTGTAAAAGGGCCTGAACTGATCAACATGTATATAGGAGAATCAGAGAAAAATGTTCGAGACATTTTTCAGAAGGCAAGGTCAGCACGTCCATGTGTTATCTTCTTTGATGAACTTGATTCTCTTGCTCCAGCCCGAGGTGCCTCTGGGGATTCTGGGGGTGTTATGGACAGAGTAGTTTCCCAGATGCTTGCAGAGATTGATGGCCTGAATGATTCTACACAGGACTTGTTTATTATAGGGGCAAGCAACAGACCTGATCTTATTGACCCTGCACTTCTCCGACCTGGCCGATTTGACAAGCTGCTATATGTTGGAGTTAACTCTGATACATCTTATCGCGAGAGGGTCCTCAAAGCACTTACCCGAAAGTTTATGTTGCATGAAGATGTATCGCTTTACTCAATAGCCAAGAAATGTCCCCCAAACTTTACTGGTGCAGACATGTATGCCCTATGTGCAGATGCTTGGTTTCAGGCTGCAAAACGAAAGGTTCTAAGTCCACCTTCTGATTCTTCTTCCATGGAAAATCAAGCTGACTCTGTCATTATTCGATATGATGATTTTGTGAAGGTCTTAAGAGATCTGACTCCCTCCCTCTCTGTAGCGGAGCTTAAAAAGTATGAGCGATTACGAGACCAGTTTGAAGGAGCTTCAAAATGA 2817 0.4345 MVERRKPLVLSSTKILLDSIRNSARLNKRDGVTGNELSANESSPTLHLPVGILRLSDEKSVSSDPKLALLDDSALVGLPTSALKRLSVTSGSPVLVRNVETNVWRIAHVVVLDSPRAHGHSSDSKLPLSHSPHTMLIFPSLKYPQNDSVLLDGEVAYLSPLLAFNLDLHISCLKSLVHQGKETLAYLFEAKADEETRGRGSEASPISLSLEQSARLPRFASHLRASFVKIPECGTLESLQGNSSIEAEDRQEMIDLALHNYFKVDRYLARGDLFSVGIKWNCRSVMCIPCSQRMQNASDDIIHFKVVAMEPADEPVLRVNCTQTALVLGGSVPSAVPPDLLIGGSKGFMPLQADTVKMLASILTPLVCPSTLASKLRVTVLLYGLAGAGKRTVIRHVAQRLGLHIVEYSCHNLMSSAERKTSVALAQVFNTAHRYSPTILLLRHFDVFRTQEGSSNDQVGIASEVASVIRKFTEPVIEDEDIYSEKKLTSDFQLKDAEKIKRHQVLLVAAADSSEGLPPTIRRCFSHEIRMGPLTEEQRAKMLSQSLQSISELLPNTDSEDFIKDIVGQTSGFMLRDMRALIADTGANLMPRCQTNKLEPGGTDNSLRFKAVQDTKSCEEAPQVLGKDDLAKALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDTSYRERVLKALTRKFMLHEDVSLYSIAKKCPPNFTGADMYALCADAWFQAAKRKVLSPPSDSSSMENQADSVIIRYDDFVKVLRDLTPSLSVAELKKYERLRDQFEGASK* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0276 938 Pfam ATPase family associated with various cellular activities (AAA) 380 531 IPR003959 GO:0005524|GO:0016887
Vvi7g0276 938 Pfam ATPase family associated with various cellular activities (AAA) 692 824 IPR003959 GO:0005524|GO:0016887
Vvi7g0276 938 Gene3D - 826 912 - -
Vvi7g0276 938 ProSitePatterns AAA-protein family signature. 795 813 IPR003960 GO:0005524|GO:0016887
Vvi7g0276 938 FunFam Peroxisomal biogenesis factor 6 650 839 - -
Vvi7g0276 938 PANTHER AAA-FAMILY ATPASE 74 935 - -
Vvi7g0276 938 Gene3D - 351 551 IPR027417 -
Vvi7g0276 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 592 IPR027417 -
Vvi7g0276 938 FunFam Peroxisome biogenesis protein 6 349 532 - -
Vvi7g0276 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 932 IPR027417 -
Vvi7g0276 938 SMART AAA_5 688 828 IPR003593 GO:0016887
Vvi7g0276 938 SMART AAA_5 376 535 IPR003593 GO:0016887
Vvi7g0276 938 Gene3D - 650 927 IPR027417 -
Vvi7g0276 938 FunFam Peroxisome biogenesis protein 6 826 912 - -
Vvi7g0276 938 CDD RecA-like_PEX6_r2 664 823 IPR047533 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0276 Vvi-Chr7 2590459 2601299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0276 658 883 Calmodulin-binding Proteins AT3G56690 40.351 6.74e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0276 K13339 - vvi:100259587 1825.06