Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0271 ATGGGTACTAGTTTCCTCTGTAGAAGAGTAGTGTCACTCGCAAATGTGGCGCAAGTGTTTGAAATTTCAAGGGCCCCGGTGCATTTTCTTCAAAATAGGCAACTTCTTATGTTTAGATCTTTCTCTTCGCCCAAACAACACTCTTTCACGGTGTCTTACCTCATGAACTCATGTGGATTGTCCCCAGAAAGTGCTCTGTCTGCATCACGGAAGGTACAGTTTGAAACCCCAGAGAGAGCAGACTCCGTCCTCGCACTCCTTAGGAATTATGGATGCACCAATACCCATATCTCCAAAATTGTAAGCAGGTATCCGGTCCTGCTCACTGCCAATCCTGAGAAGACCCTTTTGCCCAAACTGGAGTTTTTCCGTTCTGTAGGCTTTTCAGGGCCTGACCTTGCCAGCATTGTCGCTGCTAGCCCACAGATCTTGAGAAGGAGCTTGGAAAATCATGTTATTCCTAGTTATAATTTCCTCAAGAGTGTAGTTATAGTCAATGAAAAAATTGTGAGGGCCCTCAGTAAGTCATACTGGCTTAATGGTCAAACCTTGCAAAACACCATTGCTCCAAATATTGAAATTCTGAAAGAAATTGGAGTTCCCATATCAAAGATTTCGTTTTTTGTGACATGTCACCCTAGTGCAGTGTCCCAAAACAAGAAAAAGTTTAGTAGAATTGTCAAGATGGTTACTGAAATGGGATTTGATCCTTTGAGAGTTAAGTTTGTGAAAGCAGTAAAAGTGATCTGTGAAATGGGTGAATCAATGTGGGAGCATAAAATGGAGGTTTATAGGGGGTGGGGTTTGACAGATGATGATATTATGTTGATGTTCAAGTCAGATCCCTTATGCATGGCAGCATCTGAGAGGAAAATAATGAGTGTGATGGATTTTTTGGTTAATAAGATGGGTTGGGAACATGCAGCTGTTGTTAGGTATCCAACAGTCTTTTTGTGCAGTTTGGAGAAGAAGATCATTCCATGGTGTTCAGTGGTGAAAGTTATTCAAATGAAGGGGTTGGTGAAGAAGGATCTGTGTTTGTGTATTTTAGGCTACAGTGAAAAGAATTTCTTCAATAGGTTTGTGGTCAGATATGAGCAAGATGTTGCTGAGCTTTTAAATGTATATCAAGGAAAAATTGGTATTTTTGAACTTGGCTTTGTATCTGAGGGGATATGGGAGAAGAAACAGTTGTAG 1197 0.4094 MGTSFLCRRVVSLANVAQVFEISRAPVHFLQNRQLLMFRSFSSPKQHSFTVSYLMNSCGLSPESALSASRKVQFETPERADSVLALLRNYGCTNTHISKIVSRYPVLLTANPEKTLLPKLEFFRSVGFSGPDLASIVAASPQILRRSLENHVIPSYNFLKSVVIVNEKIVRALSKSYWLNGQTLQNTIAPNIEILKEIGVPISKISFFVTCHPSAVSQNKKKFSRIVKMVTEMGFDPLRVKFVKAVKVICEMGESMWEHKMEVYRGWGLTDDDIMLMFKSDPLCMAASERKIMSVMDFLVNKMGWEHAAVVRYPTVFLCSLEKKIIPWCSVVKVIQMKGLVKKDLCLCILGYSEKNFFNRFVVRYEQDVAELLNVYQGKIGIFELGFVSEGIWEKKQL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0271 398 Gene3D Transcription termination factor 3, mitochondrial 139 371 IPR038538 -
Vvi7g0271 398 PANTHER CGI-12 PROTEIN-RELATED 45 365 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 SMART mt_12 240 270 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 SMART mt_12 206 236 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 FunFam Mitochondrial transcription termination factor-like 148 369 - -
Vvi7g0271 398 Pfam mTERF 84 242 IPR003690 GO:0003690|GO:0006355
Vvi7g0271 398 Pfam mTERF 212 357 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0271 Vvi-Chr7 2522761 2523957 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0271 mTERF 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0271 K15032 - vvi:100266539 793.112