Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0268 ATGGGATTTGATCCTTTGAGAGTTCCATTTGTGAAAGCTGTTCAAGTGATCATGGAAATGGGTGAATCAATGTGGGAGCATAAAATGGAGGTTTATAGGCGGTGGGGTTTGACAGATGATGAGATTATGTTGATGTTCCGATTGGATCCCTTATGTATGAAGTCATCGGAGAAGAAAATAATGAGTGTGATGGATTTTCTGGTTAATAAGATGGGTTGGAAACCTGCTGCTATTGCTAGATATCCAACAGTCTTTTTGCGCAGTCTTGAGAAGAGGATTATTCCATGGTGTTCAGTAGTGAAAGTTCTTCAAATGAAGGGGTTGGTGAAGAAGGATCTGTGTTTGAGTTTTTTAGGCTCCAATGAGAAGAATTTGTTCAATAGGTTCATGGTGAAATATGAGCATGATGTTCCTGAGCTTTTAAATGTATATCAAGGAAAAATTGGTATTTTGGAACTTGGCTTCGTGTCTGAGGGGATAATGTAG 486 0.3889 MGFDPLRVPFVKAVQVIMEMGESMWEHKMEVYRRWGLTDDEIMLMFRLDPLCMKSSEKKIMSVMDFLVNKMGWKPAAIARYPTVFLRSLEKRIIPWCSVVKVLQMKGLVKKDLCLSFLGSNEKNLFNRFMVKYEHDVPELLNVYQGKIGILELGFVSEGIM* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0268 161 Pfam mTERF 11 123 IPR003690 GO:0003690|GO:0006355
Vvi7g0268 161 Gene3D Transcription termination factor 3, mitochondrial 1 145 IPR038538 -
Vvi7g0268 161 SMART mt_12 75 109 IPR003690 GO:0003690|GO:0006355
Vvi7g0268 161 SMART mt_12 8 38 IPR003690 GO:0003690|GO:0006355
Vvi7g0268 161 SMART mt_12 43 74 IPR003690 GO:0003690|GO:0006355
Vvi7g0268 161 PANTHER CGI-12 PROTEIN-RELATED 1 133 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0268 Vvi-Chr7 2513611 2514096 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0268 mTERF 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0268 K15032 - vvi:109122921 329.717