LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g0265	ATGACTACTACTTTCCTCAGTAAAAGAGTAGTGTCACTCAAAAATGTGGGGCAAATGTTTGAAATTTCAAGGGCCCAAGTGCATTTTCTTCAAAATACTAAACCTTTTAGGTTTAGATCTTTCTCTTCGCCCAAACAACACTCTTTTACAGTGTCGTACCTCATGAACTCATGTGGGTTGTCCACAGAAAGTGCTCTATCTGCATCACGGAAGGTACAGTTTGAAACCCCAGACAGAGCAGACTCCGTCCTCGCACTCCTTAGGAATTATGGATGCACCAATACCCATATCTCCAAAATTGTAAGCAGGTATCCGCTCCTGCTCACTGCCAATCCTGAGAAGACCCTTCTGCCCAAACTGGAGTTTTTCCGTTCTGTAGGCTTTTCAGGGCCTGACCTTGCCAGTATCGTCGTTTCAAGCCCAATTATCTTGAGAAGGAGCTTGGAAAATCATGTTATTCCTAGTTATAATTTTCTTAAGAGTGTAGTTATGGTCAATGAAAATATTGTGAGGGCTTTCAAGAAGACATTCTGGATTTCGGGTCAAAATGTGCAAAACGCCATCGCCCCAAATATTGCAATTCTGGAGGAAATTGGAGTTCCCATGTCAAATATGAAGTTTTTGGTGACATGTCACCCTAATGTAGTGTCCCAAAACAGGGAAAAGTTTAGTAGAAGTGTCAAGAAGGTTATTGAAATGGGATTCAATCCTTTGAGACTTAGCTTTCTGAAAGCAATCGAAGTCAGCTGTCAATTGACTGAATCAATGTTGGAGCATAAAATGGAGGTTTATAGGCGGTGGGGTCTGACAGATGATGAGATTATGTCGATGTTCAGATTGGATCCCTTATGTATGAAGTCATCAGAGAAGAAAATAATGAGTGTGATGGATTTTCTGGTTAATAAGATGGGTTGGGAACCTGCTGCTTTTGCTAGATATCCAACAGTCTTTTTGTGCAGTTTGGAGAAGAAGTGGTGA	978	0.4121	MTTTFLSKRVVSLKNVGQMFEISRAQVHFLQNTKPFRFRSFSSPKQHSFTVSYLMNSCGLSTESALSASRKVQFETPDRADSVLALLRNYGCTNTHISKIVSRYPLLLTANPEKTLLPKLEFFRSVGFSGPDLASIVVSSPIILRRSLENHVIPSYNFLKSVVMVNENIVRAFKKTFWISGQNVQNAIAPNIAILEEIGVPMSNMKFLVTCHPNVVSQNREKFSRSVKKVIEMGFNPLRLSFLKAIEVSCQLTESMLEHKMEVYRRWGLTDDEIMSMFRLDPLCMKSSEKKIMSVMDFLVNKMGWEPAAFARYPTVFLCSLEKKW*	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g0265	325	Gene3D	Transcription termination factor 3, mitochondrial	143	324	IPR038538	-
	Vvi7g0265	325	Pfam	mTERF	84	292	IPR003690	GO:0003690\|GO:0006355
	Vvi7g0265	325	Pfam	mTERF	252	324	IPR003690	GO:0003690\|GO:0006355
	Vvi7g0265	325	SMART	mt_12	206	236	IPR003690	GO:0003690\|GO:0006355
	Vvi7g0265	325	SMART	mt_12	98	129	IPR003690	GO:0003690\|GO:0006355
	Vvi7g0265	325	SMART	mt_12	275	306	IPR003690	GO:0003690\|GO:0006355
	Vvi7g0265	325	SMART	mt_12	170	201	IPR003690	GO:0003690\|GO:0006355
	Vvi7g0265	325	SMART	mt_12	134	166	IPR003690	GO:0003690\|GO:0006355
	Vvi7g0265	325	PANTHER	CGI-12 PROTEIN-RELATED	45	324	IPR003690	GO:0003690\|GO:0006355
	Vvi7g0265	325	FunFam	Mitochondrial transcription termination factor-like	148	325	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g0265	Vvi-Chr7	2507028	2508005	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Vvi7g0265		mTERF	5.7e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g0265	K15032		-	vvi:109121413	645.195