Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0263 ATGAGTACTGATCTCCTATCTAAAAAAGTAATGTTGATCTCAAATGTAAGGAAGATTTTGGGAAATCCAAGGACCCAACTGCGTTTGATTGAAAATAGACAACTGTTTATCTTCAGATCTTTCTGTTCGCCCAAACAACAATCTCTCTCGGTGTCTTACACAAGTGGGTTGTCCCCACAAAGTGCTCTATCTGCATCAAGGAAGTTACAGTTTGAAACCCCAGAAGGAGCAGACTCCGTCCTCGCACTCCTTAGAAATTATGGATGCACTAATACCCATATCGCCAAAATTGTAAGCAAGTATCCGGCCCTGTTCACAACCGATCCTGAGAAGACCCTTTTGCCGAAACTTGAGTTTTTCCGTTCTGTAGGCTTTTCAGGGCCTGACATTGCAGGTATTCTCTCTTCAAACCCTTATATCTTGAAAAGGGGCCTACAAAATAATCTCATTCCTACTTATACTTTCCTCAAGAGTGTAGTGATGGTCAATGAAAATGTTGTGAGGGTTTTAAGGAAGACACACTGGATTACAGTTCAAAGTGTGCAAAAAGCCATCACCCCAAATATTGCAATTCTGACAGAAATTGGAGTTCCCATGTCAAATATTTTGTTTTTGGTGACATGTCACCCTAATGCAGTGATCCAAAACAGGGAAAAGTTTAGTACAAGTGTCAAGAAGGTTGTTGAAATGGGATTCGATCCTTTGAAAGTTAGCTTTCTGAAAGCAGTCCAAGTGATCTGTGGAATGGGTGAATCAATCTGGGAGCAAAGAATGGAGGTTTATAAGCGGTGGGGTTTGACAGATGATGAGATTATGTCGATGTTCAGATTGGATCCCTTATGTATGAGGTCATCGGAGAAGAAAATAATGAGTGTGATGGATTTTTTGGTTAATAAGATGGGTTGGGAACCTGCAACTATTGCTAGATATCCAACAGTCTTTATGCGCAGTTTGGAGAAGAAGATCATTCCACGGTGTTCAGTGGTGAAAGTTCTTCAAATGAAGGGGTTGGTGAAGAAGGATCTGTGTTTGGGTATTTTAGGCTGCAGTGAAAATAATTTTTTTGATAAGTTTGTGCTCAAATATGAGCAAGAAGTTCCTGAGCTTTTAAATGTTTATCAAGGAAAAATTGGTATTTTGGAACTTGGCTTTGTATCTGAGGAGATATGGGAGAAGAAAGAGTTGTAG 1188 0.399 MSTDLLSKKVMLISNVRKILGNPRTQLRLIENRQLFIFRSFCSPKQQSLSVSYTSGLSPQSALSASRKLQFETPEGADSVLALLRNYGCTNTHIAKIVSKYPALFTTDPEKTLLPKLEFFRSVGFSGPDIAGILSSNPYILKRGLQNNLIPTYTFLKSVVMVNENVVRVLRKTHWITVQSVQKAITPNIAILTEIGVPMSNILFLVTCHPNAVIQNREKFSTSVKKVVEMGFDPLKVSFLKAVQVICGMGESIWEQRMEVYKRWGLTDDEIMSMFRLDPLCMRSSEKKIMSVMDFLVNKMGWEPATIARYPTVFMRSLEKKIIPRCSVVKVLQMKGLVKKDLCLGILGCSENNFFDKFVLKYEQEVPELLNVYQGKIGILELGFVSEEIWEKKEL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0263 395 FunFam Mitochondrial transcription termination factor-like 145 366 - -
Vvi7g0263 395 Pfam mTERF 81 289 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 Pfam mTERF 246 354 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 PANTHER CGI-12 PROTEIN-RELATED 46 363 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 SMART mt_12 167 198 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 SMART mt_12 131 163 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 SMART mt_12 237 267 IPR003690 GO:0003690|GO:0006355
Vvi7g0263 395 Gene3D Transcription termination factor 3, mitochondrial 143 369 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0263 Vvi-Chr7 2493562 2494749 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0263 mTERF 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0263 K15032 - vvi:104879767 777.319