Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0262 ATGTTTAGTTTCCTCTGCCGAACACTTCGTTTTTCGGCTCCCAATATTCAGAATTCATCCTGTTTTCTTGAAAATGTGTCACTGGTTCTCATCAGAGGCTTATCATCGTCCTCAAACAAGATATCAAACGCGGCGGACCAACAGCAACAACACTCTTTTACAGTGTCTTACCTTGTAAATAAATGTGGGTTGCCTCTCAAAACTGCTACCTCTGCATCGCAAATGGTACATTTTGAATCCTCAGAAGGGCCTGACTCGGTCCTGGCCTTTCTGAAAAACCATGGATTCTCTGATACCCAGATCGCCAAACTCATCACGAGGCGGCCCAGGTTGGTTTGTTCTGACCCTGAGGAAACCCTTCTTCCCAAAATTGAGTTTTTCAATTCGATAGGCATTAGAGGTCCTGATTTCACTAGGATTCTCACTCAGAATCCAAATATTTGGTTCCGGAGTGTAAAGAAACGATTGGCTCCTTGTTATGATTTTATCAAGAGTGTGGTTCTCTCGGAGGATAAAGCGGTTACTACTTTGAAGGGAGCACCTAGGATGCTTATGTGTGATATGCAGACAAGTATTGCTCCCAATATTGCGTTGTTGAGAAAGTTTGGAGTGAGTCAATCGACTTTGTTGTTTTTAGTGACTGGTTTTCCCAATTTACTGCTGCGGACAAGCGCCAAGTTTGAAAAACATGTCAGGGAAGTTCTTGACATGGGATTCGACCCGAAGAAATCAGAATTTGTTCATGCACTGAGAGTGTTTGCTGGAATAAGTAAGTTGAGTCGGGAACGTAAAATGGCGGTTTATAGCAGGTTTGGTTGGTCGGACCATGAGATTCTGTCGGTCTTAAAAACGCATCCCATGTGTTTGATGTTATCGGAAAAGAAAATAATGGATGGGTTGGATTTCCTGATGAATAAAATGGGTTGGCAGCGGAAGGCTGTTGCAAGAGTTCCTTTGGTTCTTTGTTATAGTTTGAATAAGAGGGTGATTCCGAGATGTGCAGTTGTGCAAGTTCTGCAGTCAGAGGGTTTGTTAAAGGAGGCAGATTTTTATTTATCTAGTGTGTTGATACCTTCTGAGAAGGTCTTCTTGGCCAGGTTTGTCATCAAATATGAAGAACAAGTTCCTCAGCTGTTGAATGTCTATAAAGGGAAATTGGGTCTTCCGGAGCTAGGCTTTGGGTCTGAGGGAATGAAGCAGTTGTAG 1206 0.4287 MFSFLCRTLRFSAPNIQNSSCFLENVSLVLIRGLSSSSNKISNAADQQQQHSFTVSYLVNKCGLPLKTATSASQMVHFESSEGPDSVLAFLKNHGFSDTQIAKLITRRPRLVCSDPEETLLPKIEFFNSIGIRGPDFTRILTQNPNIWFRSVKKRLAPCYDFIKSVVLSEDKAVTTLKGAPRMLMCDMQTSIAPNIALLRKFGVSQSTLLFLVTGFPNLLLRTSAKFEKHVREVLDMGFDPKKSEFVHALRVFAGISKLSRERKMAVYSRFGWSDHEILSVLKTHPMCLMLSEKKIMDGLDFLMNKMGWQRKAVARVPLVLCYSLNKRVIPRCAVVQVLQSEGLLKEADFYLSSVLIPSEKVFLARFVIKYEEQVPQLLNVYKGKLGLPELGFGSEGMKQL* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0262 401 FunFam Mitochondrial transcription termination factor-like 152 375 - -
Vvi7g0262 401 Gene3D Transcription termination factor 3, mitochondrial 152 377 IPR038538 -
Vvi7g0262 401 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Vvi7g0262 401 SMART mt_12 311 345 IPR003690 GO:0003690|GO:0006355
Vvi7g0262 401 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
Vvi7g0262 401 SMART mt_12 210 240 IPR003690 GO:0003690|GO:0006355
Vvi7g0262 401 SMART mt_12 279 310 IPR003690 GO:0003690|GO:0006355
Vvi7g0262 401 SMART mt_12 174 205 IPR003690 GO:0003690|GO:0006355
Vvi7g0262 401 Pfam mTERF 88 241 IPR003690 GO:0003690|GO:0006355
Vvi7g0262 401 Pfam mTERF 217 363 IPR003690 GO:0003690|GO:0006355
Vvi7g0262 401 PANTHER CGI-12 PROTEIN-RELATED 49 372 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0262 Vvi-Chr7 2489325 2490530 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0262 mTERF 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0262 K15032 - vvi:100257975 791.956