Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0258 ATGGAGTTGTACGGGCGGGCTCCGGCGAGGGATGGGTCCCAATCGGATCCTTCGGTGGAATGGAGTCCGGTCAGGGCGGTGTCGGGGCTCGAAGAGTCGATGTGGCGGTTGGGGTTGAGCAGCAGGGAATCCTACCCAGAGCGGCCTGGTGTGGCTGACTGTGTCTACTATATGAAAACCGGGTTTTGCGGGTTTGGTAGTAGGTGCCGGTACAACCATCCTCGCGATCGCAGCTCGGTTTCTACACTAAGATCCGGAGGAGGAGAGTATCCAGAGCGAATTGGGGAGCCAGCATGCCAGTTTTATTTGAAGACTGGGACCTGTAAATTTGGTGCGTCCTGCAGGTTTCACCATCCAAGAAATGGTGGTGGATCCATGAGCCATGTGTCACTAAATATTTACGGATACCCACTAAGACTGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAGTTTGGTATAACATGTAAATTCCATCATCCTCAACCAGCTGGCACATCATTGCCAGCATCTGCACCTACATTTTATCCGACGGTGCAATCTCCTTCTGTTCCTACACCTACACAATATGGGGGTACATCTACTAGCTGGAGGGTGCCAAGGCCTCCAGTATTACCTGGTTCATATGTGCAAGGCCCTTATGGTCCTGTTCTGTTCCCCCCAGGAGTGGTTCCTATTCCGGGTTGGAGTCCTTATTCGACACCTGTAAGCCCTGTACTCTCTCCTGGTGCTCAACCCACGGTAGGCGCTGGTTCTGTGTATGGAGTCACGCAGCTACCTTCAACACATACACTTGCAGGACCCTATGCATCGCTTCCCTCTTCTGCTGGCCCTTCAAGCAGTAACCAGAAGGAACAAGTGTTTCCAGAGAGACCAGGCCAACAAGAATGTCAGTACTACTTGAGAACAGGAGACTGTAAATTTGGATCATCTTGCAGGTATCATCACCCTCGGGAGTGGGTTGTCCCAAAAACAAATTGTGTCCTCAGCCCCTTGGGTTTACCTCTACGTCCGGGGGTGCAACCTTGCACTTTCTATCTGCAAAATGGGTACTGCAAGTTTGGGTCCACATGTAAATTCGATCATCCACTGGGGAACATGAGATACAGTCCATCAGCTTCTTCTCTCACTGATATGCCAGTTGCTCCATACCCTGTGGGGTCTTCACTGGCTACTCTGGCCCCTTCATTTTCATCTTCAGATCTGCGGCCTGACTTCATTTCAGGGTCAAAAAAGGATTCACACTCAACCAGAATGCCTTCATCTGGAAATACCACCAGTAGTTCAGTTGGTTTGATTTTCTCCCAGACTGGATCTGTTTCGCTTTCGGACGTCCAACTGTCAGGTCAGAGTTCAGCCCCTTTAAGCAGTAGCAGAAGCACAAGACAAGGTGGTGAGGTTCGTCGTTCAAACTAG 1428 0.5056 MELYGRAPARDGSQSDPSVEWSPVRAVSGLEESMWRLGLSSRESYPERPGVADCVYYMKTGFCGFGSRCRYNHPRDRSSVSTLRSGGGEYPERIGEPACQFYLKTGTCKFGASCRFHHPRNGGGSMSHVSLNIYGYPLRLGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPTFYPTVQSPSVPTPTQYGGTSTSWRVPRPPVLPGSYVQGPYGPVLFPPGVVPIPGWSPYSTPVSPVLSPGAQPTVGAGSVYGVTQLPSTHTLAGPYASLPSSAGPSSSNQKEQVFPERPGQQECQYYLRTGDCKFGSSCRYHHPREWVVPKTNCVLSPLGLPLRPGVQPCTFYLQNGYCKFGSTCKFDHPLGNMRYSPSASSLTDMPVAPYPVGSSLATLAPSFSSSDLRPDFISGSKKDSHSTRMPSSGNTTSSSVGLIFSQTGSVSLSDVQLSGQSSAPLSSSRSTRQGGEVRRSN* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0258 475 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Vvi7g0258 475 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Vvi7g0258 475 MobiDBLite consensus disorder prediction 449 469 - -
Vvi7g0258 475 MobiDBLite consensus disorder prediction 1 22 - -
Vvi7g0258 475 MobiDBLite consensus disorder prediction 271 293 - -
Vvi7g0258 475 MobiDBLite consensus disorder prediction 408 434 - -
Vvi7g0258 475 SUPERFAMILY CCCH zinc finger 97 121 IPR036855 GO:0046872
Vvi7g0258 475 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Vvi7g0258 475 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Vvi7g0258 475 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Vvi7g0258 475 SMART c3hfinal6 341 368 IPR000571 GO:0046872
Vvi7g0258 475 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Vvi7g0258 475 SUPERFAMILY CCCH zinc finger 343 372 IPR036855 GO:0046872
Vvi7g0258 475 MobiDBLite consensus disorder prediction 417 434 - -
Vvi7g0258 475 FunFam CCCH type zinc finger protein 293 378 - -
Vvi7g0258 475 SUPERFAMILY CCCH zinc finger 140 167 IPR036855 GO:0046872
Vvi7g0258 475 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Vvi7g0258 475 PANTHER PROTEIN PHOSPHATASE RELATED 39 399 - -
Vvi7g0258 475 MobiDBLite consensus disorder prediction 449 475 - -
Vvi7g0258 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Vvi7g0258 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Vvi7g0258 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 343 367 IPR000571 GO:0046872
Vvi7g0258 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Vvi7g0258 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Vvi7g0258 475 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Vvi7g0258 475 Gene3D - 124 172 - -
Vvi7g0258 475 SUPERFAMILY CCCH zinc finger 298 323 IPR036855 GO:0046872
Vvi7g0258 475 Gene3D - 47 123 - -
Vvi7g0258 475 Gene3D - 293 380 - -
Vvi7g0258 475 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Vvi7g0258 475 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0258 Vvi-Chr7 2452262 2460314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0258 1 445 C2H2 Transcription Factor Family AT5G18550 53.664 5.06e-144 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi7g0258 zf-CCCH 1.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0258 - - vvi:100245975 957.592