Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0247 ATGGAGGAAGACACTGCCACTGAGAGAAAGGAAGACTTTGGAAAAATGCAATACGGATGCGAGCATTACAAGAGACGCTGCAAAATTCGAGCCCCATGCTGCAACAAGATCTTCCCATGCCGCCACTGCCATAACGAAGCCATGACATCTTTGAGCGACCCCAAGGATCGTCATGAAATTGTTAGGCACGACATTAAGCAAGTGATATGTTCGGTTTGCAATGAGGAGCAGCAGGTTGCTCGGGTTTGTTCCAACTGTGGTGTCAACATGGGGGAATATTTTTGCGATATTTGCAAATTCTATGATGATGATACTGAGAAGCAGCAGTTTCATTGTGATGAATGTGGAATTTGTAGAGTTGGTGGCCGAGAGAAATTCTTTCATTGCCAAAAGTGTGGATCCTGCTATTCAGTGGATCTGCGCGATAATCACCTATGTGTAGAGAACTCTATGAGGAGTCACTGCCCCATCTGTTTTGAGTATCTTTTTGAATCAGTTAAAAGCACAACGATTATGAAATGTGGACACACAATGCATGTAGAATGCTACATTGAAATGGCAAATCAAAATCAGTATCGTTGTCCCATCTGCTCCAAGTCCATGATTGACATGTCAAGATCCTGGGAATTATTAGACTGGGAGATTAGAGCTACTGCCATGCCTGAGGAATACAGTCATGAGGTAGTTGCTTCTTCCATGCTTCTCTTTTAG 711 0.4332 MEEDTATERKEDFGKMQYGCEHYKRRCKIRAPCCNKIFPCRHCHNEAMTSLSDPKDRHEIVRHDIKQVICSVCNEEQQVARVCSNCGVNMGEYFCDICKFYDDDTEKQQFHCDECGICRVGGREKFFHCQKCGSCYSVDLRDNHLCVENSMRSHCPICFEYLFESVKSTTIMKCGHTMHVECYIEMANQNQYRCPICSKSMIDMSRSWELLDWEIRATAMPEEYSHEVVASSMLLF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0247 236 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 5 228 - -
Vvi7g0247 236 SUPERFAMILY Zinc hairpin stack 91 148 IPR037275 -
Vvi7g0247 236 SMART ring_2 155 197 IPR001841 -
Vvi7g0247 236 SUPERFAMILY CHY zinc finger-like 15 89 IPR037274 GO:0008270
Vvi7g0247 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 212 IPR013083 -
Vvi7g0247 236 Pfam CHY zinc finger 20 100 IPR008913 GO:0008270
Vvi7g0247 236 SUPERFAMILY RING/U-box 154 203 - -
Vvi7g0247 236 Pfam Ring finger domain 154 197 IPR001841 -
Vvi7g0247 236 ProSiteProfiles Zinc finger CHY-type profile. 13 88 IPR008913 GO:0008270
Vvi7g0247 236 ProSiteProfiles Zinc finger RING-type profile. 155 198 IPR001841 -
Vvi7g0247 236 ProSiteProfiles Zinc finger CTCHY-type profile. 90 154 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0247 Vvi-Chr7 2388679 2393025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0247 12 226 C2H2 Transcription Factor Family AT3G18290 40.000 4.87e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0247 K10144 - vvi:100264899 507.679