Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0246 ATGAGTGATTCACCGGGAGACAATTTGCATCATCGTCACGAAGAAGAAGGCCAGAAGATGACGATCCAGAATCGGCTCTGCGACTTCTGTGGAGATTCCATGGCTCTATTGTACTGCAGAGCCGACTCTGCAAAGCTCTGTCTCTCCTGCGACCGGGAGGTCCACTCCACCAACCAGCTGTTCACCAAGCACACTCGCTCACGCCTCTGTGACGTCTGTGATGCCTCGCCTGCCTCGATTCTCTGCTCCACCGACAACCTCGTTCTCTGCCAGAACTGTGATTGGGCAAAGCACGGCCGTTCTTTGTCGTCGGCGCATGATCGAAGGCCTCTGGAGGGGTTCTCTGGGCAACCTTCGGTGACGGAGTTGTTGGCGTTTGTTGGGTTTGAAGATTTGGGGAAGAAATCTTTGTTTTGTGGAGATGAGAGTGAGGTTAATGAGTTTTTGGGGTGTGGGGTTTATGAATCGGTGGGTGTGGATGAAGAGTTTTCAGATTTCCTGGTTTGGGACACTCCTGCTGTTGTTAATCTTGATGATTTGATTGTTTCAACTGCTTGTGATCACAACTTTCAAGCTATGGGGGTTCCTCCTCTGCCCAAGAACCGTGGCGCTCCTTGCGGGCAACACAAAGCAGAAATAATTCATCAGCTTCGCCAATTGGCAAAGATCGAACTGAGTTTTGATTTTGATCATGGAGATGCTAAACCGCCTATTGGCTTCCAGTCCCATATACCCAAACAGCTCATTCAGAAAGAAAATGAATGTAACAGTTGTGACCATGAGGTGGAGTTTGTTTTTCCTACCTATGAGGCAAGTGCATTTCAGTGGTGCAGTGATGGCAGTGAGGCTGCAAATCAAGTTCTCCCATCTGTACTATTAGGAAGTTGTGCTGACGAAAAGTGTTTGGTTCCCAGGAAACATTCAGATATCGGTGGTAGTGTAAGCCATACCAATGGTAGCGATGAAGGGAAATCAGAGTGTCCTGTTGTTACAAAAACATTACCAGCCCTTCCTAAAGTTTCTGTGCATGAGCTAAACAGCCAGGAAAGAGACTCTGCAATTTCACGGTACAAGGAGAAGAAGAAAACTAGAAGATATGAGAAGCACATCAGGTACGAGTCGCGGAAGGCTCGAGCAGAGAGCAGGATACGAATCAAGGGGCGTTTTGCTAAGATGGATCACTGA 1185 0.4802 MSDSPGDNLHHRHEEEGQKMTIQNRLCDFCGDSMALLYCRADSAKLCLSCDREVHSTNQLFTKHTRSRLCDVCDASPASILCSTDNLVLCQNCDWAKHGRSLSSAHDRRPLEGFSGQPSVTELLAFVGFEDLGKKSLFCGDESEVNEFLGCGVYESVGVDEEFSDFLVWDTPAVVNLDDLIVSTACDHNFQAMGVPPLPKNRGAPCGQHKAEIIHQLRQLAKIELSFDFDHGDAKPPIGFQSHIPKQLIQKENECNSCDHEVEFVFPTYEASAFQWCSDGSEAANQVLPSVLLGSCADEKCLVPRKHSDIGGSVSHTNGSDEGKSECPVVTKTLPALPKVSVHELNSQERDSAISRYKEKKKTRRYEKHIRYESRKARAESRIRIKGRFAKMDH* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0246 394 ProSiteProfiles Zinc finger B-box type profile. 65 111 IPR000315 GO:0008270
Vvi7g0246 394 SMART bboxneu5 70 111 IPR000315 GO:0008270
Vvi7g0246 394 SMART bboxneu5 22 69 IPR000315 GO:0008270
Vvi7g0246 394 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Vvi7g0246 394 Pfam CCT motif 350 392 IPR010402 GO:0005515
Vvi7g0246 394 Pfam B-box zinc finger 23 66 IPR000315 GO:0008270
Vvi7g0246 394 Pfam B-box zinc finger 67 110 IPR000315 GO:0008270
Vvi7g0246 394 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 26 393 - -
Vvi7g0246 394 ProSiteProfiles Zinc finger B-box type profile. 22 69 IPR000315 GO:0008270
Vvi7g0246 394 CDD Bbox1_BBX-like 26 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0246 Vvi-Chr7 2380513 2383530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0246 15 365 C2C2-CO-like Transcription Factor Family AT2G47890 42.817 5.94e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vvi7g0246 zf-B_box 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0246 - - vvi:100259713 811.601