Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0240 ATGTCATTTAAGAGTATCATTCAGGATATGAGGGGGGAATTTGGGAGCATTTCTAGAAAAGGGTTTGAAGTGAAATTTAACTATGGGTTGAGATCACGGTCGCACCGGGTGGTTCAGGATAGTTCCATGGTGGTTGATGCGTTGAGACAGAGTTGTTGGGCTAACATGCCTCCTGAATTGCTGAGAGACGTGTTAATGAGGATAGAAGCATCTGAGAGTACTTGGCCTCCTCGGAAAAATGTGGTTGCTTGTGCTGGTGTGTGCAGAAGTTGGAGAGAAATCACTAAGGAAATTGTGAAAACCCCAGAACTGTCGGGCAAGTTGACGTTCCCCATCTCTTTGAAGCAGCCTGGGCCAAGGGGCTCCCTCCTTCAGTGTTATATAAAGCGGAATCGTAGCAACCAAACATATCATCTCTATCTCGGCTTAAATCAAGCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCACGGAAGTGTAGACGTCCTACTTGCACAGACTATATCATCTCTCTTAATGCTGATGATGTTTCCAAGGGGAGCACCACTTATATTGGAAAGTTGAGGTCAAATTTTCTGGGAACCAAGTTCACTGTCTATGATGCGCAGCCTCCAAATGCAGGAGCAAGGATTAGTAAATCTCGTTCAACCAGGCGACTGGGTTCAAGACAAGTCTCCCCTAGAGTCCCTGCTGGCAACTATCCTGTAGCCCACATTTCATATGAATTGAATGTCTTGGGTTCCAGGGGTCCAAGGAGAATGCAGTGTGTCATGGATGCCATCCCTGCCAATGCCATTGAGCCAGGAGGAGTGGCCCCCACCCAAACTGAATTTGTTCTTAGCAATGTGGATTCCTTTCCATCCTTCCCATTTTTCAGATCAAAATCTAACCGAACAGAGAGTTTGCATTCTGGGCCTTTGTCTGGCCCAAAAGATGAAATGCTGGTTTTGAAAAACAAGGCCCCTAGGTGGCATGAGCAACTCCAATGCTGGTGTCTGAACTTCAATGGACGGGTGACAGTTGCTTCAGTAAAGAATTTTCAGCTGGTTGCTTCTGCAGAGAATGGAGTTGCTGGTCAGGAGCATGAAAATGTCATTCTCCAGTTTGGAAAAGTGGGAAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCAGCTTTTCAGGCATTTGCCATCTGCCTCAGCAGCTTTGACACCAAAATTGCTTGTGAGTGA 1218 0.4598 MSFKSIIQDMRGEFGSISRKGFEVKFNYGLRSRSHRVVQDSSMVVDALRQSCWANMPPELLRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSGKLTFPISLKQPGPRGSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISLNADDVSKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAGNYPVAHISYELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFVLSNVDSFPSFPFFRSKSNRTESLHSGPLSGPKDEMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASAENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0240 405 PANTHER TUBBY-RELATED 46 403 - -
Vvi7g0240 405 Pfam Tub family 114 400 IPR000007 -
Vvi7g0240 405 PRINTS Tubby superfamily signature 317 334 IPR000007 -
Vvi7g0240 405 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Vvi7g0240 405 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Vvi7g0240 405 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Vvi7g0240 405 PRINTS Tubby superfamily signature 335 351 IPR000007 -
Vvi7g0240 405 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Vvi7g0240 405 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Vvi7g0240 405 SUPERFAMILY Tubby C-terminal domain-like 102 405 IPR025659 -
Vvi7g0240 405 ProSitePatterns Tub family signature 2. 390 405 IPR018066 -
Vvi7g0240 405 FunFam Tubby-like F-box protein 110 405 - -
Vvi7g0240 405 MobiDBLite consensus disorder prediction 208 227 - -
Vvi7g0240 405 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
Vvi7g0240 405 Pfam F-box domain 53 100 IPR001810 GO:0005515
Vvi7g0240 405 CDD F-box_AtTLP-like 53 97 - -
Vvi7g0240 405 Gene3D Tubby Protein; Chain A 111 405 IPR025659 -
Vvi7g0240 405 MobiDBLite consensus disorder prediction 209 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0240 Vvi-Chr7 2324569 2328255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0240 1 405 TUB Transcription Factor Family AT2G47900 82.598 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi7g0240 Tub 3.4e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0240 K19600 - vvi:100244335 810.061