Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0234 ATGGGTAGTGGTGGAGATGGTGAGAGGATGAGGGTTGATCTCGAGGGAGATGGGTTGCAGAGTAAAAACATCCAAGATGAAAATGATGATCTGTATACTGAACTATGGCTTGGATGTGCTGGGCCTCTTGTCAACATTCTGCGTGCCGGCCAGAAGGTTGTCTACTTCCCTCAAGGTCACATAGAACAGGTTGAGGCCTATACAAACCAGGATGGCCAAATGGAAATGCCAATCTACAATTTACCTTCTAAGATTTTCTGCAAAGTTGTTTACGTTCAGCTAAAGGCTGAAGCTTGTACAGATGAGGTGTTTGCGCAAGTTACTTTGCTTCCAGAGGCAAAGCAAGAGTGGCAAAGTCCAGATCATGGAAATTCTCAGTTTTTCCCTCGAAGAACTCATTCATACTCCTTTAGCAAGACTCTCACTCCGTCTGATACAAACACACATGGTGGGTTCTCTGTTCCGAAGCGACATGCTGATGAATGTCTTCCACCTCTGGACATGACCCAGCAACCCCCAGTACAGGAACTGATTGCAAAGGACTTGCATGGGACTGAATGGCGCTTTCGCCATATATTTCGAGGTCAGCCAAAGCGGCACTTGCTTACTAGTGGTTGGAGTCAATTTGTGACTTCAAAGAAGCTTGTTGCTGGAGATGCCTGCATTTTCCTTAGGGGAGCAAATGGTGAACTTCGTGTTGGGGTCCGGAGAGCTACAAGATTACAAAACAATGTATCAGCATCAGTACTATCCGGCCACAGCATGCAACATGGCATACTTGCAAGTGCCTTCCATGCCATTTCTACGGGAACCATGTTTACTGTATATTTCCGTCCTTGGACTAGTCCTGAATTTATTATTCCTTATGACCAATACATAAAATCTGCTGAAAACAATTACTCAGTTGGAACAAGATTCAGAATGCTGTTTGAAGGTGAAGAATGTTCACAGCAAAGATGTGCAGGTACTATAGTTGGCATTGAAGATGTTGATGCCATTAGGTGGCCCAATTCAGAATGGAGACGTTTCAAGGTGCAATGGGATACATCAGATATTACTCCATGTCCTGAAAGGGTGGCTGCATGGAACATTGAGCCAATAGAATTCATTAAGAAGAAGCATACTTCTATTCTACCCCAACTAAAGAGGGCACGCCCAACTGATCCACTGTGTCCTGCTATTCCTATATTGGTTGGGGATGGTCAAGAAAACGACGATATAGGTGCTCACAAGCCAGATACATCAAAACTGCCATCATTGCTGGTTGTTCCTCCACCAAATTCCGATTGGGGTCCTCAGCACTTCCCAATGCATGACCCATTCTATCAATGTCCTGGCAAAACAATATTGTTCCAGGGTGAAAACCCTCTGAGTTCTGGGATTGCTAATGGCTGCTCCCTAACATTTACCTATTGTGGAGCCTGTGATAATGTTGGAGGGAGCAGAAACTTGTCTTTTGCAAACCTCGACTCCAGCAATTGTGAGTTCCAGGATTGGAGGGCTCTAGAGCCAAAGGGCAATGAAGCTTCATTTGCCCAACAGAACCGCATTGACAAATTCAAGCTTTTTGGTGTAAATTTAATTAATAGTCCAGCGGAGCTCCCTTCACCACAAGTTGCCAGTTCCAGTGAGCTGCAAAGTCCTTGTTCCATTCCTCCAACATCTCAGTCAAGCATTTCTGAATCTATCCAAGCTTCAGAGCCATCTAAGAGTGTTTCTGGTGACCTTTCAGACAAACAGTGCAAGAACTGTTGCTCGGTCATGGTCAGGAGCTGCACAAAGGTACTCAAGTATGGAACTGCCCTTGGAAGATCAATTGATCTTGCACGCTTTGACGGGTATGATGAGCTCATCATCGAGCTTGACCAGATGTTTGATTTCGGAGGAAGTTTGATGGATGGCAGCTGCAGGTGGCATGTAACATACACAGATGATGAGGGTGACATGATGCTGCTCGGAGATTACCCATGGCAGGAATTCCGGTCTATGGTGCAGAGGATCTTCATATGTCCAAAGGAAGAGACTGAGAGACTGAATTCAGCTACACCCTCATGA 2055 0.453 MGSGGDGERMRVDLEGDGLQSKNIQDENDDLYTELWLGCAGPLVNILRAGQKVVYFPQGHIEQVEAYTNQDGQMEMPIYNLPSKIFCKVVYVQLKAEACTDEVFAQVTLLPEAKQEWQSPDHGNSQFFPRRTHSYSFSKTLTPSDTNTHGGFSVPKRHADECLPPLDMTQQPPVQELIAKDLHGTEWRFRHIFRGQPKRHLLTSGWSQFVTSKKLVAGDACIFLRGANGELRVGVRRATRLQNNVSASVLSGHSMQHGILASAFHAISTGTMFTVYFRPWTSPEFIIPYDQYIKSAENNYSVGTRFRMLFEGEECSQQRCAGTIVGIEDVDAIRWPNSEWRRFKVQWDTSDITPCPERVAAWNIEPIEFIKKKHTSILPQLKRARPTDPLCPAIPILVGDGQENDDIGAHKPDTSKLPSLLVVPPPNSDWGPQHFPMHDPFYQCPGKTILFQGENPLSSGIANGCSLTFTYCGACDNVGGSRNLSFANLDSSNCEFQDWRALEPKGNEASFAQQNRIDKFKLFGVNLINSPAELPSPQVASSSELQSPCSIPPTSQSSISESIQASEPSKSVSGDLSDKQCKNCCSVMVRSCTKVLKYGTALGRSIDLARFDGYDELIIELDQMFDFGGSLMDGSCRWHVTYTDDEGDMMLLGDYPWQEFRSMVQRIFICPKEETERLNSATPS* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0234 684 Pfam AUX/IAA family 631 670 IPR033389 -
Vvi7g0234 684 Gene3D - 585 679 - -
Vvi7g0234 684 Gene3D - 299 372 - -
Vvi7g0234 684 Pfam Auxin response factor 263 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi7g0234 684 CDD B3_DNA 136 237 IPR003340 GO:0003677
Vvi7g0234 684 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
Vvi7g0234 684 MobiDBLite consensus disorder prediction 537 579 - -
Vvi7g0234 684 Gene3D - 135 239 IPR015300 -
Vvi7g0234 684 Pfam B3 DNA binding domain 137 238 IPR003340 GO:0003677
Vvi7g0234 684 FunFam Auxin response factor 135 239 - -
Vvi7g0234 684 SUPERFAMILY DNA-binding pseudobarrel domain 127 266 IPR015300 -
Vvi7g0234 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi7g0234 684 SUPERFAMILY CAD & PB1 domains 594 667 - -
Vvi7g0234 684 FunFam Auxin response factor 299 371 - -
Vvi7g0234 684 SMART B3_2 137 239 IPR003340 GO:0003677
Vvi7g0234 684 ProSiteProfiles PB1 domain profile. 590 672 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0234 Vvi-Chr7 2256656 2262296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0234 28 679 B3 DNA Binding Superfamily AT1G59750 43.308 4.48e-172 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi7g0234 B3 1.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0234 - - vvi:100246055 1375.92