Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0228 ATGGCGGAAGCTCCTAAACCGCGAAAAGCCAGCGAAGACAGCGTCAAGCTCTTCGTAGGGCAAGTGCCCAAGAACATGACCGAAGCTCAGCTTCTGGCAATGTTCAAAGAGTTCGCTCTAGTGGACGAGGTCAACATCATCAAGGACAAAGCCACGCGTGCTTCAAGAGGTTGCTGTTTTGTTATATGTCCTTCCAGACAGGAAGCAGACAAGGCAGTAAATGCGTGTCATAATAAGCGAACTCTCCCCGGGGCATCTAGCCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGGCTAGAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCTGAGAGGTTCTCAGCAGACAAGCAAAGGTTGTGCTTTTTTGAAGTATGAGACCAAAGAACAGGCCCTTGCAGCCCTGGAGGCGATCAATGGGAAGCATAAAATGGAGGGTTCAAGTGTTCCTCTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGGAAGGCTCAGAAAGCTCAATCTCAGGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGGCTCCTGGTGCTTATGGACTTATGCAATATCGCATGCCACCCATGCAGAGTCAGGCTGCTTTCCATAATATGATTCCTCAAGTAAACCAAGGAAGTGCCATGCGTGCAATTGCTCCTGATCTTGCTCGTGCTGTGGCCCCTAGAAATTATGCTGTGCCTTCTGCTAGTTATATGGGCTCGGCTTATCCTGCATTGCCAGGTCTTCAGTATCCTATGGCATATCATGGAGGAATTATGAGTCACCAGCCTTTGAGTGGTTCCCCTGGTTCTAGGCCACCTGCAATGATGACTAGTAACTCCCCAACAAATTCAGGTGCCGGTGCAAGTTCGGGGGGTCAGGTTGAAGGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGCCAAGGTCTTTGTCGACAAAGCAACTGGTGCTAGCAAATGTTTTGGATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGATGAACGGATGCCAATTAGGCGGTAAGAAGTTGAAGGTTCAACTTAAAAGAGACAACAACAAACAGAACAAACCTTATTGA 1314 0.4581 MAEAPKPRKASEDSVKLFVGQVPKNMTEAQLLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSRQEADKAVNACHNKRTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSEAEVSSLFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNLPSADSGQHPSLFGALPLGYVPPYNGYGYQAPGAYGLMQYRMPPMQSQAAFHNMIPQVNQGSAMRAIAPDLARAVAPRNYAVPSASYMGSAYPALPGLQYPMAYHGGIMSHQPLSGSPGSRPPAMMTSNSPTNSGAGASSGGQVEGPPGANLFIYHIPQEFGDHELAHAFQQFGRVLSAKVFVDKATGASKCFGFVSYDSPASAQSAISMMNGCQLGGKKLKVQLKRDNNKQNKPY* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0228 437 CDD RRM1_2_CELF1-6_like 104 179 - -
Vvi7g0228 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Vvi7g0228 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Vvi7g0228 437 Gene3D - 100 192 IPR012677 -
Vvi7g0228 437 SMART rrm1_1 352 425 IPR000504 GO:0003723
Vvi7g0228 437 SMART rrm1_1 104 179 IPR000504 GO:0003723
Vvi7g0228 437 SMART rrm1_1 16 92 IPR000504 GO:0003723
Vvi7g0228 437 MobiDBLite consensus disorder prediction 314 344 - -
Vvi7g0228 437 SUPERFAMILY RNA-binding domain, RBD 103 433 IPR035979 GO:0003676
Vvi7g0228 437 MobiDBLite consensus disorder prediction 193 207 - -
Vvi7g0228 437 FunFam RNA-binding protein BRN1 318 428 - -
Vvi7g0228 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Vvi7g0228 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 423 IPR000504 GO:0003723
Vvi7g0228 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Vvi7g0228 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 429 IPR000504 GO:0003723
Vvi7g0228 437 CDD RRM1_2_CELF1-6_like 16 92 - -
Vvi7g0228 437 Gene3D - 3 99 IPR012677 -
Vvi7g0228 437 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Vvi7g0228 437 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Vvi7g0228 437 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Vvi7g0228 437 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Vvi7g0228 437 MobiDBLite consensus disorder prediction 314 341 - -
Vvi7g0228 437 FunFam RNA-binding protein BRN1 2 99 - -
Vvi7g0228 437 MobiDBLite consensus disorder prediction 185 207 - -
Vvi7g0228 437 CDD RRM3_CELF1-6 353 425 - -
Vvi7g0228 437 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Vvi7g0228 437 Gene3D - 322 428 IPR012677 -
Vvi7g0228 437 PANTHER RNA BINDING PROTEIN 14 430 - -
Vvi7g0228 437 SUPERFAMILY RNA-binding domain, RBD 7 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0228 Vvi-Chr7 2207076 2213208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0228 350 433 Eukaryotic Initiation Factors Gene Family AT1G71770 36.471 4.81e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0228 K13207 - vvi:100257891 850.892