Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0217 ATGGCTGGGTCGAAGCCATGGCTGTATCCTGCTCCCACTTATCGGACCTTGGAGAGCTACTGGGACACCGACGACGACGCGCCCGGCCCCCGCTGCGGTCACACTCTCACCGCCATCGCCCCCACCAAAACGCACGGCCCCCGCCTCATCCTCTTCGGCGGTGCCACCGCAATCGAGGGCGGCGCCTCCTCCTCTGCCCCCGGCATCCGTCTGGCTGGAGTGACGAATTCGGTTCACTCGTATGACGTTCTCACCCGGAAGTGGACCAGACTTCGACCTGCTGGAGAGCCACCGTCTGTTAGGGCTGCACATGCTGCTGCTGCAGTTGGCACGATGGTCGTTTTTCAGGGTGGCATAGGTCCTGCTGGGCATTCCACTGATGATCTCTACGTGCTTGACTTGACCAATGACAAGTACAAGTGGCACAGAGTGGTTGTCCAAGGACAAGGTCCTGGGCCTCGTTATGGACACGTAATTGACTTGGTCGCTCAAAGATATCTTGTCACTGTCAGTGGAAATGATGGAAAACGAGTTCTATCAGATGCTTGGGCTTTGGACACTGCTCAGAAACCATATGCATGGCAGAGGCTCAACCCAGAAGGTGATAGACCTTCTGCTAGAATGTATGCAACGGCTAGTGCCCGCTCAGATGGCATGTTTTTGCTTTGTGGTGGAAGGGATTCGTCTGGTGCGCCACTTGCTGATGCCTATGGGCTGCTTATGCATAGGAATGGCCAGTGGGAGTGGACCCTTGCACCAGGGGTGTCTCCATCACCAAGGTACCAACATGCTGCGGTTTTTGTTGGTGCTCGGTTGCATGTTACAGGAGGTGCTCTCAGGGGAGGTCGGGCAATAGAAGGTGAAGCAGCTGTAGCAGTATTGGACACTGCTGCTGGAGTTTGGCTAGACAGAAATGGGCTTGTTACTTCCCCACGCATTAACAAGGGGCACACTGAATACGATCCTTCTCTGGAGCTTATGCGTCGTTGTCGACATGCAGCAGCTTCTGTTGGAGTTCGTATTTATATTTATGGTGGTCTTAAAGGAGACATGCTGCTAGACGATTTCCTGATTGCAGAAAATTCAGCATTTCAGTCTGATATTAATTCTCCTATATTAACTTCTGATAGAGCCGCAACCATCACAAGCCCCAAACTTAATCAATCTAATGCAAATCTATATGGAACAACACCAACTCCAGATGGCAGACTTGAGGTTCCCTCATCTGGAGCCGCAAGCATGGACAAAAGTTCCATGGAGAAATTGGCGGAGGCTTCTGCTGCTGAAGCAGAGGCAGTAAGCGCTGTATGGCAAGCAATGCAGGCAGCATCTGCTGTTCCTTCTGATGAAACATCAGTATCTGATGACAACTCACAAGCTGCTGAAACCACTTCAGATGGTAGTGACACTGAGGCTGATGTTCGCCTCCACCCTAGAGCTGTTGTAGTTGCTAAGGAGGCTGTTGGGAATTTGGGTGGGATGGTAAGGCAATTGTCCTTGGATCAGTTTGAAAATGAGAGCAGGCGAATGGTTCCCATGAATAACGACTTGTCATATCCTACAAGAAAGTTCACCAGGCAGAAATCCCCTCAGGGCTTGCATAAAAAGATTATTTCTACATTGCTCAGGCCTCGGAACTGGAAAGCTCCTGCAAATAGGAGGTTTTTCCTTGATTCTTATGAAGTGGGAGAGCTTTGTTATGCTGCTGAACAGATATTTATGCATGAGCCAACAGTTCTCCAGCTGAAAGCTCCTATTAAAGTATTTGGTGATCTTCATGGACAATTTGGTGATTTGATGCGTCTATTTGATGAATATGGATTTCCATCCACTGCAGGAGACATAACGTATATTGACTATTTGTTTTTGGGAGATTATGTTGATCGAGGACAGCACAGCTTGGAGACTATAACTTTGCTTCTTGCTCTTAAGATTGAGTATCCTGAGAATGTTCACTTGATACGTGGAAACCATGAGGCTGCTGACATAAATGCACTTTTTGGTTTTCGTCTTGAATGCATTGAGAGAATGGGAGAGAGTGATGGGATATGGGCATGGACACGGTTCAACCAACTTTTCAACTTTCTTCCACTTGCTGCGCTTATTGAGAAGAAGATTATCTGTATGCATGGTGGGATAGGGAGGTCTATAAGTTCTGTGGAACAGATAGAAAAGCTTGAAAGGCCTATAACGATGGATGCTGGGTCTATAATTTTAATGGACCTTCTATGGTCTGATCCTACAGAAAATGATAGCATAGAGGGTTTGAGACCAAATGCTAGAGGACCTGGTCTTGTCACTTTTGGGCCTGACCGAGTCACGGACTTCTGTAAGAAAAACAAATTGCAGCTCATTATAAGAGCTCATGAATGTGTTATGGATGGGTTTGAACGGTTTGCTCAGGGACAGTTGATTACACTTTTTTCTGCAACTAATTATTGTGGGACGGCAAACAATGCTGGAGCGATACTGGTTGTTGGCAGGGGGCTGGTTGTGGTTCCAAAACTGATTCATCCCTTGCCACCTCCCCTCCAATCACCTGAGACATCTCCCGAGCGTACGGTAGATGACACATGGATGCAGGAGCTTAACATTCAAAGACCACCAACTCCTACTCGAGGCCGCCCACAACCTGACCTTGACCGCAACTCACTTGCATATATATGA 2667 0.4829 MAGSKPWLYPAPTYRTLESYWDTDDDAPGPRCGHTLTAIAPTKTHGPRLILFGGATAIEGGASSSAPGIRLAGVTNSVHSYDVLTRKWTRLRPAGEPPSVRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVIDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSPRINKGHTEYDPSLELMRRCRHAAASVGVRIYIYGGLKGDMLLDDFLIAENSAFQSDINSPILTSDRAATITSPKLNQSNANLYGTTPTPDGRLEVPSSGAASMDKSSMEKLAEASAAEAEAVSAVWQAMQAASAVPSDETSVSDDNSQAAETTSDGSDTEADVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMVPMNNDLSYPTRKFTRQKSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPIKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGESDGIWAWTRFNQLFNFLPLAALIEKKIICMHGGIGRSISSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERTVDDTWMQELNIQRPPTPTRGRPQPDLDRNSLAYI* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0217 888 SMART pp2a_7 557 843 IPR006186 GO:0016787
Vvi7g0217 888 Pfam Serine-threonine protein phosphatase N-terminal domain 536 583 IPR031675 -
Vvi7g0217 888 FunFam Serine/threonine-protein phosphatase 522 861 - -
Vvi7g0217 888 Pfam Galactose oxidase, central domain 117 157 - -
Vvi7g0217 888 Pfam Galactose oxidase, central domain 30 98 - -
Vvi7g0217 888 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 9 888 - -
Vvi7g0217 888 MobiDBLite consensus disorder prediction 445 474 - -
Vvi7g0217 888 Pfam Calcineurin-like phosphoesterase 585 792 IPR004843 GO:0016787
Vvi7g0217 888 MobiDBLite consensus disorder prediction 863 888 - -
Vvi7g0217 888 Gene3D - 520 856 IPR029052 -
Vvi7g0217 888 PRINTS Serine/threonine phosphatase family signature 620 647 IPR006186 GO:0016787
Vvi7g0217 888 PRINTS Serine/threonine phosphatase family signature 585 612 IPR006186 GO:0016787
Vvi7g0217 888 PRINTS Serine/threonine phosphatase family signature 721 748 IPR006186 GO:0016787
Vvi7g0217 888 PRINTS Serine/threonine phosphatase family signature 691 717 IPR006186 GO:0016787
Vvi7g0217 888 PRINTS Serine/threonine phosphatase family signature 653 677 IPR006186 GO:0016787
Vvi7g0217 888 PRINTS Serine/threonine phosphatase family signature 781 801 IPR006186 GO:0016787
Vvi7g0217 888 PRINTS Serine/threonine phosphatase family signature 803 819 IPR006186 GO:0016787
Vvi7g0217 888 MobiDBLite consensus disorder prediction 445 467 - -
Vvi7g0217 888 PIRSF STPPP_BSU1 1 888 IPR012391 GO:0004721|GO:0009742
Vvi7g0217 888 Gene3D - 197 406 IPR015915 GO:0005515
Vvi7g0217 888 ProSitePatterns Serine/threonine specific protein phosphatases signature. 654 659 IPR006186 GO:0016787
Vvi7g0217 888 SUPERFAMILY Metallo-dependent phosphatases 538 849 IPR029052 -
Vvi7g0217 888 SUPERFAMILY Kelch motif 72 360 IPR015915 GO:0005515
Vvi7g0217 888 Gene3D - 8 196 IPR015915 GO:0005515
Vvi7g0217 888 MobiDBLite consensus disorder prediction 388 423 - -
Vvi7g0217 888 FunFam Serine/threonine-protein phosphatase 10 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0217 Vvi-Chr7 2106477 2123173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0217 586 784 Calmodulin-binding Proteins AT5G63870 32.609 4.68e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0217 K01090 - vvi:100249353 1754.95