Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0199 ATGGGGACTAGGAAGCAGGCTTCGTCCTCCCCAAATTGTGTTCTTGAGGACTACCTGAGCAGGTTAGAATCAGAGACAAGTTCTTCCAAAGAAGGCACCTCCGGCTCTGGAAGTTCACAAAATACCAAACCCACTTGGCGTGGATTAATCCAATTGCTTAGAACTCAATCAAAGAGACGATTAGCAACATTGGATCCTCGCAATGTGTGGAAGTACTCAGTGAGAAAATGCAGAAGCATGAGATTCAGCAATGGCGTGGGGCGGAATCTTGATGGTGAGACTGTCTCATATTCAAGGTCTGGGTGGAAGAACTTCACCCTCTCTGAACTTCAGCGTGCCACCAAGAATTTCAGCCATGAAAATCTAATTGGAAAGGGTGGATATGCTGAAGTATATAAAGGGTGTCTGCAGGATGGGCAGCTTGTAGCAGTCAAGAGGCTTGTGAGAGGAAAGCCAGAAGAGAGAACAGGGAATTTCCTCTCTGAGCTTGGGATTATGGCTCATGTCAACCATCCCAACACTGCTAAACTCATTGGTTATGGGGTTGAAGGAGGACTGCACCTTGTTCTTGAGTTGTCTCCACATGGCAGCTTAGCTTCTTTACTTCATGGTGGTAGGGTGAAATTGAAATGGAGTATGAGGTATCAAGTGGCATTAGGGATTGCAGAGGGTCTACTCTACCTTCATGAGGGTTGTCAAAGGAGATTCATCCATAGAGACATCAAAGCTTCAAATATCTTGCTCACAGAGGACTTTCAGCCTCAGATTTGTGATTTTGGACTCGCCAAATGGCTACCAGAGCAATGGACTCACCACACTATATCAAGCTTTGAAGGCACATTCGGCTACCTTGCTCCTGAGTACTTAATGCATGGAATAGTGGATGAAAAAACCGATGTTTATGCCTTCGGTGTCTTGCTACTGGAGCTGATCACCGGCCGCCGAGCTCTGGAATGCTCGCAGCGAAGCCTTGTCACCTGGGTATGTTTTTTTTTTTTTTTTTTTGTTTTCCTACACTAA 1020 0.4569 MGTRKQASSSPNCVLEDYLSRLESETSSSKEGTSGSGSSQNTKPTWRGLIQLLRTQSKRRLATLDPRNVWKYSVRKCRSMRFSNGVGRNLDGETVSYSRSGWKNFTLSELQRATKNFSHENLIGKGGYAEVYKGCLQDGQLVAVKRLVRGKPEERTGNFLSELGIMAHVNHPNTAKLIGYGVEGGLHLVLELSPHGSLASLLHGGRVKLKWSMRYQVALGIAEGLLYLHEGCQRRFIHRDIKASNILLTEDFQPQICDFGLAKWLPEQWTHHTISSFEGTFGYLAPEYLMHGIVDEKTDVYAFGVLLLELITGRRALECSQRSLVTWVCFFFFFFVFLH* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0199 339 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 194 332 - -
Vvi7g0199 339 SMART serkin_6 117 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0199 339 Gene3D Phosphorylase Kinase; domain 1 90 191 - -
Vvi7g0199 339 Pfam Protein kinase domain 118 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0199 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vvi7g0199 339 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 88 191 - -
Vvi7g0199 339 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524
Vvi7g0199 339 PANTHER OS08G0249100 PROTEIN 5 328 IPR046958 -
Vvi7g0199 339 MobiDBLite consensus disorder prediction 22 44 - -
Vvi7g0199 339 ProSiteProfiles Protein kinase domain profile. 117 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0199 339 SUPERFAMILY Protein kinase-like (PK-like) 94 320 IPR011009 -
Vvi7g0199 339 Gene3D Transferase(Phosphotransferase) domain 1 194 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0199 Vvi-Chr7 1998964 2001020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0199 88 327 Receptor kinase-like Gene Family AT4G02010 43.478 5.35e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi7g0199 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0199 - - vvi:100240843 645.966