Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0198 ATGAGTTTATTTTGGTTCTTATTATTGGAGCTTTGTTCTACCATCTTCACCACCAACCTGCCACCACCGGTCTTCAACCCGGAAATCTTTTTAAAAAAAAGAGTAAAACCATCTTTTGATCTTTGGGTGGATATTTTAGGCAGTGGGCTTTGTTGGTGGGCTCCCAAGACACTGACTTCCTTTTCCTTCTCCTCCGCCCAATACAACCTGGCTCCATGTCCTCTCGACTTCGAACCCCTCCTCAATGTCACCACCTTCGACGTAAACGCCTCTACCCAGTGTCAGTACGTTATCCAGGGCCTCCGCCTCGTTCTGGCCACCTACCTCCAGAGCACTGGGTCGTTCCTCCCTCCGATCAACTCGTCTGAGTCGTGTTGGGATTCGTACCAGAGCGTGGTCAACAACTTCACCTCCAATTTCAATATTCGATCCGATTGCGGCTTCGAAACCACCTGGATCTCTGAGGGTTGTATGAACATCACCACCCGATCCCAATTCGATGCTGTGGTGTCGCAGGCCACGCGAGCTGATATTGTCGCGTCGTGCAATCAGTCGCTGGAGAACAGCTCGCCCTGTGCCACCTGCACCACCAGCTTGTCTAATCTTCAGGCGGTATATCTGACCGGTTCCAGCGTCGGGAATCTCACTGATTGTACGGCCTACCCGTCGATTTACGCCGCCGGCTTCGCCAACTACCTTGGACCCACCGATCCCGGGACGGCCAAGTGTTTGTTTAACCTCAATTTTGCGTCTGGTGGTTCAGGGAATAAGCGGCGAGGTGTTGTGATTGTGGTGGTTGTGGTGGTGTGTAGTGTTGTGTTCTTGGCGGTGATTGGTGGGGTTTGGGTTTTTTACCGGAAACGCCGAGAATCGAGGAGCGTGAAGCGCGAGATTGTGAATATTGAAATGGGTTTGGAGTCGATCAGTGGGAGTACTACATTGATTAAGTTCACCATTGATGAGATTAGGCAGGCTACTAGGAATTTCACTAGAGACAACATCATTGGAAGAGGAGGTTATGGCAATGTGTACAAGGGGGTATTGAAGGATGGCTCTGAAGTTGCATTCAAAAGGTTCAAGAACTGCTCTGCTGCTGGTGATACAAATTTTGCCCATGAGGTTGAGGTTATTGCGAGTGTGAGGCATGTAAATTTAGTCGCTTTGAGAGGGTATTGTACTGCCACGACTCCATTAGAGGGTCACCAGAGGATAATTGTGTGTGATTTGATGAAGAATGGCAGTCTTCATGACCATCTTTTTGGGTCAACTGAAAAACTTAGTTGGCCTCTTCGTCAAAAGATTGCACTTGGAACAGCTCGAGGGTTGGCTTATTTGCATTCTGGTGCTCAACCAGGTATTATCCATAGGGATATCAAAGCCAGTAATATACTTTTGGATGAGAAGTTTGAGCCAAAGGTGGCAGATTTTGGGCTTGCGAAGTTTACACCCGAGGGAATGACTCATTTGAGCACTAGGGTTGCAGGGACAATGGGTTATGTTGCCCCAGAGTATGCATTGTATGGACAGTTGACAGAGAGGAGTGATGTGTACAGCTTTGGTGTTGTGCTTCTTGAGCTTTTAAGTGGGAAGAAGGCTCTCATGGTGATTGGTGAGAACCAGCCCTCTCTTGTGACTGATTGGGCTTGGTCATTGGTGAGGAAGGGGAGGGCTATAGATGTTGTTGATAATAGTATGCCAGAGTTGGGTTCGCCAGAAGTTATGGAGAAGTATGTATTGGTTGCAGTTCTTTGTTCTCATCCACAGCTATATGCTCGGCCAGCAATGGATCAGGTTGTGAAAATATTGGAGACAGATTTGCCAGTTCCCTCGATCCCAGAACGCCCAATTTCCATTGTGGCTGAGATGGATGATATTGAGAGATCTGTGAGCAGCAGTGATATGGGTTGTATTTCTTCTTCAGCTGGTTACCAGTCATTTACATTTGAGGGCCAACAACATTCTGACTAA 1968 0.4787 MSLFWFLLLELCSTIFTTNLPPPVFNPEIFLKKRVKPSFDLWVDILGSGLCWWAPKTLTSFSFSSAQYNLAPCPLDFEPLLNVTTFDVNASTQCQYVIQGLRLVLATYLQSTGSFLPPINSSESCWDSYQSVVNNFTSNFNIRSDCGFETTWISEGCMNITTRSQFDAVVSQATRADIVASCNQSLENSSPCATCTTSLSNLQAVYLTGSSVGNLTDCTAYPSIYAAGFANYLGPTDPGTAKCLFNLNFASGGSGNKRRGVVIVVVVVVCSVVFLAVIGGVWVFYRKRRESRSVKREIVNIEMGLESISGSTTLIKFTIDEIRQATRNFTRDNIIGRGGYGNVYKGVLKDGSEVAFKRFKNCSAAGDTNFAHEVEVIASVRHVNLVALRGYCTATTPLEGHQRIIVCDLMKNGSLHDHLFGSTEKLSWPLRQKIALGTARGLAYLHSGAQPGIIHRDIKASNILLDEKFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGKKALMVIGENQPSLVTDWAWSLVRKGRAIDVVDNSMPELGSPEVMEKYVLVAVLCSHPQLYARPAMDQVVKILETDLPVPSIPERPISIVAEMDDIERSVSSSDMGCISSSAGYQSFTFEGQQHSD* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0198 655 SMART serkin_6 329 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0198 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 88 625 - -
Vvi7g0198 655 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 288 408 - -
Vvi7g0198 655 CDD STKc_IRAK 335 603 - -
Vvi7g0198 655 ProSiteProfiles Protein kinase domain profile. 329 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0198 655 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 410 610 - -
Vvi7g0198 655 SUPERFAMILY Protein kinase-like (PK-like) 314 630 IPR011009 -
Vvi7g0198 655 Gene3D Transferase(Phosphotransferase) domain 1 410 607 - -
Vvi7g0198 655 Gene3D Phosphorylase Kinase; domain 1 290 408 - -
Vvi7g0198 655 Pfam SPARK 71 214 IPR043891 -
Vvi7g0198 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vvi7g0198 655 Pfam Protein kinase domain 330 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0198 655 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0198 Vvi-Chr7 1985542 1993672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0198 62 650 Receptor kinase-like Gene Family AT2G48010 63.255 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vvi7g0198 Pkinase 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0198 - - vvi:100852842 1169.45