Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0188 ATGATACAGACCATTATGAACATGAAGATAAGAAGTTATGGCTGCATTACAAAACCGAGTCTTTTGCTTGTACATCCAGAGTTACCTTGTAGACCCCAGTTAATTTTTGCATCGAGTCTTGGGTTCTCGAGTAACCGTGAGAAGAGAATTGGACACGCTACGAGATTACAGTACTCTGTTGCAGATAAAACATTTGTGTCTAGTTCTACCAATTCACCTTTATCCAAGGTGAACGCCACCCATTTGGAACAGAGGCAAGGAGGTTCCTCATCCTTATATAGCCGCCCTAGTTTATTACAGATGAAGAATCAACGAATAGAAAATCGTGCCCGGGTTTATGAGTTCTTGAAGGGGATTGGTATTGTTCCTGATGAGCTTGATGGACTGGAGCTTCCTGTAACAGTTGAGGTCATGAAGGAGCGGGTAGATTTCCTTCATAAATTAGGGCTTTCAATTGAAGACATTAACAACTACCCTCTTGTTCTTGGCTGTAGTGTGAAGAAAAACATGATTCCCGTGCTTGATTATCTCGGCAAATTGGGTGTTAGGAAATCCACTTTCACTGAGTTCTTGCGAAGATATCCACAAGTCCTCCATGCCAGTGTTGTAGTAGACCTTGCACCTGTGGTAAAGAACCTGCAAGGGATGGATATCAAGCCAAATGATATTCCTCGGGTTCTTGAGAAGTATCCAGAAGTATTGGGATTCAAACTTGAGGGAACTATGAGCACATCTGTGGCTTATTTGGTTGGAATTGGGGTGGCAAGAAGAGAAATTGGAGGGGTTTTAACTAGATACCCAGAGATATTGGGTATGAGAGTAGGTCGTGTGATCAAACCTTTTGTGGAGTATCTTGAAAGTTTGGGGATTCCAAGATTAGCTGTGGCTAGATTAATAGAGAAGCGGCCTCACATCCTTGGATTTGGATTGGAGGAAAGGGTGAAAGCTAATGTCAAATCCCTTCTAGAATTTGATGTGAGAAAAACATCACTTGCTTCCATGATAGCACAATATCCTGAGATCATAGGAATTGACCTGGAGCCAAAGCTTCTTAGTCAACGGAGCCTTCTCAATTCAGCTCTTGATTTGGGTCCTGAGGATTTCCCAATAGTTGTTGAAAAGATGCCACAGGTTGTTAGCCTTGGTAAAACACCTATGTTGAAGCATGTGGATTTCCTCAAGGATTGTGGATTCTCCTTGCAACAAGTGAGAAAGATGGTTGTAGGATGCCCCCAATTGCTTGCTTTGAACCTTGACATCATGAAATTTAGCTTTGATTTCTTCCAGAAGGAGATGGAGAGGCCTCTAGATGACTTGGTTGCTTTCCCTGCTTTCTTCACTTATGGTCTGGAGTCTACCATAAGACCGAGACATCAGATGGTTGCAAAGAAAGGGTTGAAATGTTCTCTTTCATGGCTTCTCATTTGCTCTGATGAGAAGTTTGAGGAACGGATGAACTATGACTCTATTGAGTTGGAGGAGATGGAAATGGTGTCATCATTTGACATGAACACATTGATGGAACCAAGGAGCGATGAGTCTGATGAGTCTGCTTCTGACTACGAGGAGGATAGTGATGATGAATATGCATAG 1593 0.4244 MIQTIMNMKIRSYGCITKPSLLLVHPELPCRPQLIFASSLGFSSNREKRIGHATRLQYSVADKTFVSSSTNSPLSKVNATHLEQRQGGSSSLYSRPSLLQMKNQRIENRARVYEFLKGIGIVPDELDGLELPVTVEVMKERVDFLHKLGLSIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHASVVVDLAPVVKNLQGMDIKPNDIPRVLEKYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKRPHILGFGLEERVKANVKSLLEFDVRKTSLASMIAQYPEIIGIDLEPKLLSQRSLLNSALDLGPEDFPIVVEKMPQVVSLGKTPMLKHVDFLKDCGFSLQQVRKMVVGCPQLLALNLDIMKFSFDFFQKEMERPLDDLVAFPAFFTYGLESTIRPRHQMVAKKGLKCSLSWLLICSDEKFEERMNYDSIELEEMEMVSSFDMNTLMEPRSDESDESASDYEEDSDDEYA* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0188 530 MobiDBLite consensus disorder prediction 503 530 - -
Vvi7g0188 530 FunFam Transcription termination factor MTERF4, chloroplastic 276 490 - -
Vvi7g0188 530 Gene3D Transcription termination factor 3, mitochondrial 277 491 IPR038538 -
Vvi7g0188 530 Gene3D Transcription termination factor 3, mitochondrial 138 276 IPR038538 -
Vvi7g0188 530 PANTHER CGI-12 PROTEIN-RELATED 173 486 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 FunFam Transcription termination factor mterf4, chloroplastic 138 275 - -
Vvi7g0188 530 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 332 364 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 369 399 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 152 183 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 188 219 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 436 467 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 89 122 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 SMART mt_12 404 435 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 Pfam mTERF 174 482 IPR003690 GO:0003690|GO:0006355
Vvi7g0188 530 MobiDBLite consensus disorder prediction 515 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0188 Vvi-Chr7 1888237 1889829 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0188 mTERF 6.5e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0188 K15032 - vvi:100249461 1001.5