Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0178 ATGATTCCGTGGGGTGGCATCAGTTGCTGTTTGAGCGCAGCTGCTCTTTACCTTCTTGGAAGGAGCAGTGGAAGGGATGCGGAGGCGTTGAAGTCGGTTACTCGAGTTCAGCAATTGAAGGATTTGGTACAGTTGCTAGATACAGCATGCAAAGTATTACCTTTAGTCGTTACGGTATCTGGAAGAGTTGGCTCTGACACACCAATCAAATGCGAGTATAGTGGGTTACGAGGTGTAATTGTGGAGGAAACGGCAGAGCAACATTTTCTGAAACACAATGATGCTGGTTCGTGGATACAAGATTCGGCTTTGATGTTGTCCATGAGTAAGGAGGTTCCCTGGTACTTGGATGATGACACAGGTCGTGCATATATAGTGGGAGCCCGAGGTGCCACGGGTTTGGTATTGACAGTTGGAAGTGAAGTGTTTGAGGAGTCAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAGATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTGACTGTTGTTGGTGAGGCTATCAAAGATGATGTTGGAACAATTCGTATTCAGCGGCCCCATAAAGGACCATTTTATGTCTCTCCCAAAAGTATTGATCATCTTGTTGCAAATCTTGGCAAATGGGCAAGGTGGTACAGGTATGCCTCTCTGGGGTTTACAGTATTTGGAGTTTATCTGATTGCTAAGAGTGCTATCCAATATGTCATGGAAAGAAAGCGTTGTTGGGAATTGCGTAAAAGGGTTCTTGCTGCTGCTTCTAAAAAATCAGGGCAAGACAGTGAAGATCCTGATGAAAAGGATGAGAATGGATCAGATAATACGAAAAGGGACAGACTAATGCCTGATCTATGTGTGATCTGCCTAGAGCAGGAATACAATGCTGTTTTTGTCCCGTGTGGCCATATGTGCTGTTGTACAATGTGCTCTTCTCAGTTGACCAACTGTCCACTTTGCCGACGACGGATCGAGCAGGTAGTAAGGACTTTCCGTCACTAA 1032 0.4583 MIPWGGISCCLSAAALYLLGRSSGRDAEALKSVTRVQQLKDLVQLLDTACKVLPLVVTVSGRVGSDTPIKCEYSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDDTGRAYIVGARGATGLVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTPLTVVGEAIKDDVGTIRIQRPHKGPFYVSPKSIDHLVANLGKWARWYRYASLGFTVFGVYLIAKSAIQYVMERKRCWELRKRVLAAASKKSGQDSEDPDEKDENGSDNTKRDRLMPDLCVICLEQEYNAVFVPCGHMCCCTMCSSQLTNCPLCRRRIEQVVRTFRH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0178 343 ProSiteProfiles Zinc finger RING-type profile. 296 331 IPR001841 -
Vvi7g0178 343 Pfam E3 Ubiquitin ligase 87 236 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vvi7g0178 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 342 IPR013083 -
Vvi7g0178 343 FunFam E3 ubiquitin-protein ligase SP1 284 342 - -
Vvi7g0178 343 Pfam Zinc finger, C3HC4 type (RING finger) 294 337 - -
Vvi7g0178 343 CDD RING-HC_LRSAM1 296 339 - -
Vvi7g0178 343 PANTHER - 1 310 IPR044231 GO:0004842|GO:0016567
Vvi7g0178 343 MobiDBLite consensus disorder prediction 265 286 - -
Vvi7g0178 343 SUPERFAMILY RING/U-box 295 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0178 Vvi-Chr7 1821828 1830204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0178 1 273 C3H Transcription Factor Family AT1G63900 74.725 4.84e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0178 K15688 - vvi:100247743 685.256