Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0172 ATGGGGAAGGTTTGCCGGGAGGGTGGGAAGCCGTCGTCATCGTCGCCGCTGGTGACGACGTCGACGTCGATCACTGAGACGGTGAACGGCTCGCACCAGTTCAAGATCACGGGGTATTCGTTGTCGAAGGGGTTGGGGATTGGGAAGTACATAGCGTCGGATACGTTCGTGGTGGGAGGTTACGCTTGGGCGATCTACTTCTACCCGGACGGCAAAAGCGTGGAGGACAATGCGGCGTATGTGTCGCTGTTCATCGCGTTGGCGAGCGAGGGCACGGATGTGAGGGCGCTTTTTGAGCTCACACTATTGGACCAGAGTGGGAAGGAGAGGCACAAGGTGCATAGCCATTTTGGAAGGCCGTTGGAGAGCGGCCCCTACACTCTTAAATACCGAGGAAGCATGTGGGGTTACAAGCGATTTTTCAAAAGAACTGCTCTAGAGACATCAGACTACCTTAAAGATGATTGCCTCTCAGTTCACTGCAGTGTTGGACTTGTTAGGTCACATACAGAGGGGCCTAAGATATACTCTATTGCAGTACCACCTTGTAACATTGGTCAGCATTTTGGGCAGCTATTGGAAAGTGGAAAGGGAACTGATGTAAACTTTGAAGTAGATGGGGAAACTTTTTCTGCTCACAAGCTGGTACTTGCAGCTCGCTCACCTGTATTCAGGGCCCAACTTTTTGGGCCAATGAAGGATCAGAATACTCAGTGTATTAAAGTTGAGGACATGGAGGCTCCAGTTTTTAAGGCTCTACTTCACTTTATATACTGGGATTCATTACCTGACATGGAAGAGCTTACTGGCTTAAACTCGAAATGGGCTTCTACTTTGATGGCTCAGCATCTGCTTGCTGCAGCAGATCGGTATGGTCTAGATAGGCTCAGGCTGCTATGCGAGTCTAATCTCTGTGAGGATGTTGCCATAAACACTGTGGCAACTACATTAGCCTTGGCAGAGCAGCACCACTGTTTCCAGCTGAAAGCTGTGTGTCTCAAATTTGTTGCAATGCCTGAAAATCTGAGAGCTGTGATGCAAACAGATGGCTTTGAATACTTGAAGGAAAGTTGCCCCTCTGTTCTGACGGAGCTCTTGGAGTACGTGGCTCGAGTTAGCGAACACTCTGTCATTGTGTGCAGGCATGGGAATGAAGCTATCCTTGATGGGAGCGACATCAATGGAAGGCGGGTGAAGCAGAGGCTATAG 1209 0.4971 MGKVCREGGKPSSSSPLVTTSTSITETVNGSHQFKITGYSLSKGLGIGKYIASDTFVVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFGRPLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVHCSVGLVRSHTEGPKIYSIAVPPCNIGQHFGQLLESGKGTDVNFEVDGETFSAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGLNSKWASTLMAQHLLAAADRYGLDRLRLLCESNLCEDVAINTVATTLALAEQHHCFQLKAVCLKFVAMPENLRAVMQTDGFEYLKESCPSVLTELLEYVARVSEHSVIVCRHGNEAILDGSDINGRRVKQRL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0172 402 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 20 366 IPR045005 GO:0016567
Vvi7g0172 402 SUPERFAMILY TRAF domain-like 26 163 - -
Vvi7g0172 402 FunFam BTB-POZ and math domain 1 175 302 - -
Vvi7g0172 402 FunFam BTB-POZ and math domain 1 308 385 - -
Vvi7g0172 402 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 28 167 IPR008974 GO:0005515
Vvi7g0172 402 CDD MATH 30 163 IPR002083 GO:0005515
Vvi7g0172 402 SMART math_3 34 146 IPR002083 GO:0005515
Vvi7g0172 402 Gene3D - 308 382 - -
Vvi7g0172 402 MobiDBLite consensus disorder prediction 1 21 - -
Vvi7g0172 402 Pfam BTB/POZ domain 190 306 IPR000210 GO:0005515
Vvi7g0172 402 SMART BTB_4 199 308 IPR000210 GO:0005515
Vvi7g0172 402 Gene3D Potassium Channel Kv1.1; Chain A 175 303 IPR011333 -
Vvi7g0172 402 CDD BTB_POZ_BPM_plant 185 305 - -
Vvi7g0172 402 CDD BACK_AtBPM-like 305 368 IPR034090 -
Vvi7g0172 402 ProSiteProfiles BTB domain profile. 199 266 IPR000210 GO:0005515
Vvi7g0172 402 ProSiteProfiles MATH/TRAF domain profile. 29 163 IPR002083 GO:0005515
Vvi7g0172 402 SUPERFAMILY POZ domain 176 306 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0172 Vvi-Chr7 1782333 1786760 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi7g0172 BTB 8e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0172 K10523 - vvi:100258076 810.831