Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0156 ATGGGCTCGGAGGCAGTTCCTTCGGAATCTAGAACTACAAGGTACAAATGTTTGGCCTGCTTCAGGCAATATAAGAAGAAGGAGCATCTAGTTGAGCACATGAGGGTATCATATCATTCTGTGCATCAGCCAAAATGTGGGGTCTGCCAGAAGCAGTTCAAATCTTTCCAGTCACTAAGGGAACACCTTACTGGTAATTTGCCCAAGAAAAATTGTTTGAAGATATTCTCTGAGCAAGGTTGCAACTACTGTTTGAAAATCTTCAAGAATGCTGATTCTCTCAGTGAGCATAAAGAAATGTGTCAATTACCTGTGCCTGTTACAATAGAAAAAATCAGGATGCCATCTACAGAATCTCAAATTGATTTTTCAGATTCTATTAATAGAGACCACACTAGCAGAGGTCTTGAAGCAATTGCCATTGACTGTGAAAAGGTTGGTGGCGGAAGTGATGGATCGCTTGACCTTTGTGCTAGGGTATGCCTCATAGATGAAGATGAGAATATAATTTTTCACACTTATGTGCAGCCACAAATTCCTGTCACCAATTACAGATATGAGTTAACTGGGATTACTGAAGCACATCTGAGAGATGCCATGCCACTAAAGGAAGTGCGGGAAAAAGTTATGGAAGTTTTACGAAATGGAGAATCCATTGGGCGACTGCGTTTGGATGGTGGGAAGGGCAGACTTCTTGTGGGTCATGACCTACGCCATGACCTGGATTGCTTGAGAATGCACTATCCTGATCACTTGCTGAGGGATACTGCAAAATACCTCCCCTTGATGAAAACAAATTTAGTCAGCTTCTCCCTGAAGTCGCTCACTCAAAAATATCTTGGGTACGATATCCAGTCAGGGATGCATGATCCATATGAAGATTGTGTATCTGTAATGAGGCTGTACAAGAGAATGCAATCTCAAGATCACTCAGACGAAGGAATTGGAACAGCCATTGTTAATCACCATACCCAAAGTTTTGGCAGTGGTTTTGATTCCTGGAAACTTAGGGAGCTCAAGAATATGACCCCAGATGAGCTTTATAAGCTCTCAAGACCAAACTACAGGTGTTGGTGTTTGGACTCAAGACAAGCATTACAGGCTGAGAGTAATGATCTTTGGGCACAATAG 1131 0.4218 MGSEAVPSESRTTRYKCLACFRQYKKKEHLVEHMRVSYHSVHQPKCGVCQKQFKSFQSLREHLTGNLPKKNCLKIFSEQGCNYCLKIFKNADSLSEHKEMCQLPVPVTIEKIRMPSTESQIDFSDSINRDHTSRGLEAIAIDCEKVGGGSDGSLDLCARVCLIDEDENIIFHTYVQPQIPVTNYRYELTGITEAHLRDAMPLKEVREKVMEVLRNGESIGRLRLDGGKGRLLVGHDLRHDLDCLRMHYPDHLLRDTAKYLPLMKTNLVSFSLKSLTQKYLGYDIQSGMHDPYEDCVSVMRLYKRMQSQDHSDEGIGTAIVNHHTQSFGSGFDSWKLRELKNMTPDELYKLSRPNYRCWCLDSRQALQAESNDLWAQ* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0156 376 Pfam Exonuclease 139 302 IPR013520 -
Vvi7g0156 376 SMART c2h2final6 15 39 IPR013087 -
Vvi7g0156 376 SMART c2h2final6 79 99 IPR013087 -
Vvi7g0156 376 SMART c2h2final6 44 64 IPR013087 -
Vvi7g0156 376 Gene3D Classic Zinc Finger 2 66 - -
Vvi7g0156 376 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 20 359 IPR047021 GO:0004527
Vvi7g0156 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Vvi7g0156 376 Gene3D - 136 324 IPR036397 GO:0003676
Vvi7g0156 376 SUPERFAMILY beta-beta-alpha zinc fingers 14 63 IPR036236 -
Vvi7g0156 376 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Vvi7g0156 376 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Vvi7g0156 376 SMART exoiiiendus 137 311 IPR013520 -
Vvi7g0156 376 SUPERFAMILY Ribonuclease H-like 139 306 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0156 Vvi-Chr7 1661043 1669214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0156 10 362 C2H2 Transcription Factor Family AT5G40310 52.646 9.35e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0156 K18327 - vvi:100259575 761.525