Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0142 ATGGGAGATTTGTTTGGGCATCAGTTTATGCAATTTATGCTTGTGAACAGCTACATTGGAGCTGCTTTTGCCATGGGTAATATGGAAGAACAAAGTGGGCATGAGAATCCTCTGCAGTTGATGTCATTTTCTTTTGGTGGGAGTATTAATGATGCATCGTATGTACCAAAGGATGATCCTAGCCATCACTTTACCAGGGGGTCTGGAAAGAATGAGAACCCTCCGAATGCTCTGTATTTGTCTCAGTGGATTCATGGCCAGCCAACATCTCACAATTATGTCAAATTTCTAGAAGAAAGTTCAACATTTCCCCATAAGGCTCCTGCAAAAGATATAGTGGACGCCATCCCTTTACCGGTTGGTAGCTTGCATGCTGTAAATGGGGTCTCTGAGATTCCAAGTGAGGTTTTATATAACAGTTTGGCAAATGCATGTGGTTTTAAGCTTGCTGATCCTTCCCTTATCATGGATGCTTGGAAGGAAAATTTGTCTGTCCCTGTACTCAATAACCACCATGAAGCTTCAACAAGTGCAGCAGGATTTTTATGCTCTAGTCAAAACGAGGTAACATACCTGAACCCACAGAATGGAGGACAAGTGAACAAATTCACCAGTACACAATACCAGATATGCACTCAGGATTGTACATCAAGGACACAAGAACTAAATGAAGATAATTTTAATGTTTCTAAACACAATTCAAGAGTAGCAATTGCTCCACCTTGTTTCCAATCGAAACCACGCAGCAGTGCATCACGACAGAGGGCATCTGCAACTGACCGTCGTCGCAGACTAAGAATCTCTGAAAGACTCAAAGCATTGCAAGTACTGCTCCCACATTCTGAGGGTGGTAAAGCATCCGTTCTTGATGATATCATTGACTATATCAAGCATTTGCAGTTACAAATCAAGGATTTAAGTCAAAGCCGATTGGGTGGTCAATCAACTTCTGATCCTTTTATTTTTCTTGAGGGATATGGACACTACATTCTACACGATCAGATGCTGAAAGAACCACTTGAAGAGATGATGGGAAAGTTACTGGAGGTGAATCCATCAGAAGCTACACAATTATTAGAGGGTAGAGGCCTTTATGTGATGCCCATGACTTTGGTCGAAGGTTTACTCCAGACAATGTAG 1140 0.4175 MGDLFGHQFMQFMLVNSYIGAAFAMGNMEEQSGHENPLQLMSFSFGGSINDASYVPKDDPSHHFTRGSGKNENPPNALYLSQWIHGQPTSHNYVKFLEESSTFPHKAPAKDIVDAIPLPVGSLHAVNGVSEIPSEVLYNSLANACGFKLADPSLIMDAWKENLSVPVLNNHHEASTSAAGFLCSSQNEVTYLNPQNGGQVNKFTSTQYQICTQDCTSRTQELNEDNFNVSKHNSRVAIAPPCFQSKPRSSASRQRASATDRRRRLRISERLKALQVLLPHSEGGKASVLDDIIDYIKHLQLQIKDLSQSRLGGQSTSDPFIFLEGYGHYILHDQMLKEPLEEMMGKLLEVNPSEATQLLEGRGLYVMPMTLVEGLLQTM* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0142 379 Pfam Helix-loop-helix DNA-binding domain 253 300 IPR011598 GO:0046983
Vvi7g0142 379 SMART finulus 257 305 IPR011598 GO:0046983
Vvi7g0142 379 Gene3D - 249 317 IPR036638 GO:0046983
Vvi7g0142 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 93 371 - -
Vvi7g0142 379 MobiDBLite consensus disorder prediction 241 262 - -
Vvi7g0142 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 311 IPR036638 GO:0046983
Vvi7g0142 379 CDD bHLH_AtbHLH_like 248 307 IPR045239 -
Vvi7g0142 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 299 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0142 Vvi-Chr7 1500405 1504360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0142 239 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 39.103 3.21e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g0142 HLH 8.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0142 - - vvi:100853547 704.516