Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0140 ATGGGTTACGAAAACGATCCATATCGCGATGAGGATGGGGAGCCGTTGATGGACTTCGATGAGGTCCAATCCGATCGGGAAGTGGAGGATCAAGGTCATCTCCTCCAAGACGACATCCCCGATGACAACGACGACGATTGGCGCCGCCGGGAACGGTCCCCGACGCCGGTGTACGGAGACGACTCCGGTTTCTCTAAATCCAAGCCAAGGAAGAGGCTAGTAAAGAAGAGCGCGAAGGAGAGCCCCCTTCACTACCCCGGGATCGACGAGGATGACTCGCCGGCGGCGTTTCAAGGTGACGTCGACGAGGATGATTTTTTGAGGAAGAGGAAGGATATTGATAGTGGAAGCAAGAGGAAGGAGAAGAAATTGAGGTTGGAGAAGAAAGATAAGGGGTTCAAATCGGGCTTGAAGAAGGGGATGTCGAGGCGGTCCAAGGATCAGGATGGCGATGCAGAGGTGAAGGAGCTTTGGGATACGATTGCAGGAGGAGATTCTGAGGATGATCACGAGGGTCCAAGGACTGTGGATGATGATAACTTCATAGATGATACTGGTGTTGACCCTGCTGACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAGGCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGTAAGAAAAAGAAGAAAAATGAGAAAAGTGCAGCAGAAATTGCATTGCTTGTTGAGAATGTCATGGCTGAGCTAGAAGTTACAGCTGAAGAAGATGCAGAACTGAATAGACAGTCAAAACCTGCTATTAATAAACTCAAAAAGCTCCCTCTTCTTACTGAGGTTCTCTCAAAGAAACAACTCCAGCAAGAATTCTTAGATCATGGGGTACTGACCCTTTTGAAGAATTGGCTTGAACCACTTCCTGACGGAAGCTTACCCAATATAAACATCCGAGCAGCAATATTAAGGATCTTAACTGATTTCCCTATTGATCTAGAGCAGTATGATAGAAGAGAGCAGCTGAAGAAGAGTGGTCTTGGAAAGGTCATTATGTTCTTATCAAAGTCTGATGAGGAGACTACCGCCAACAGAAAACTTGCTAAGGATTTGGTTGATAAATGGAGTCGGCCCATATTTAATAAGAGCACAAGGTTTGAAGATATGAGGAACTTTGATGATGAGAGGGTTCCCTTTCGGAGGCCATCTGCAAAGAAGCCAATGAATAAAGCTGCAGGAATGGAATCTAGAGATGATGATCTTGATTTGGCTGACCTTCCACAGGAAAGGAAGTCTGGACAATCATCTTCTAGGTTACATGCGTCAAGGCCAGAGGCAATGCCGCTAGATTTTATAGTGCGTCCTCAGTCTAAGATTGATCCAGATGAAATTAGGGCCCGTGCTAAACAAGTTGTACAGGATCAACGTCGTCTGAAGATGAACAAGAAGCTGCAACAGTTGAAGGCACCCAAAAAGAAGCAGCTTCAAGCTACAAAACTCAGCGTTGAAGGTCGTGGTATGGTCAAATACTTGTAG 1524 0.4672 MGYENDPYRDEDGEPLMDFDEVQSDREVEDQGHLLQDDIPDDNDDDWRRRERSPTPVYGDDSGFSKSKPRKRLVKKSAKESPLHYPGIDEDDSPAAFQGDVDEDDFLRKRKDIDSGSKRKEKKLRLEKKDKGFKSGLKKGMSRRSKDQDGDAEVKELWDTIAGGDSEDDHEGPRTVDDDNFIDDTGVDPADRYGSDREARSPGDAPQAEEGEEDEEIKQLFKMGKKKKKNEKSAAEIALLVENVMAELEVTAEEDAELNRQSKPAINKLKKLPLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRILTDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEETTANRKLAKDLVDKWSRPIFNKSTRFEDMRNFDDERVPFRRPSAKKPMNKAAGMESRDDDLDLADLPQERKSGQSSSRLHASRPEAMPLDFIVRPQSKIDPDEIRARAKQVVQDQRRLKMNKKLQQLKAPKKKQLQATKLSVEGRGMVKYL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0140 507 MobiDBLite consensus disorder prediction 101 207 - -
Vvi7g0140 507 PANTHER PROTEIN IWS1 HOMOLOG 1 1 507 IPR044204 GO:0009742|GO:0032784
Vvi7g0140 507 MobiDBLite consensus disorder prediction 393 416 - -
Vvi7g0140 507 Pfam TFIIS helical bundle-like domain 330 375 IPR017923 -
Vvi7g0140 507 ProSiteProfiles TFIIS N-terminal domain profile. 295 378 IPR017923 -
Vvi7g0140 507 MobiDBLite consensus disorder prediction 24 56 - -
Vvi7g0140 507 MobiDBLite consensus disorder prediction 24 216 - -
Vvi7g0140 507 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 233 381 IPR035441 -
Vvi7g0140 507 FunFam Protein IWS1 homolog 1 234 381 - -
Vvi7g0140 507 Coils Coil 241 261 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi7g0140 Med26 4.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0140 K17498 - vvi:100249381 921.768