Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0130 ATGGCTGCGCCGCCGAATAGCCGGCTTCAGAGTATGTTGCAGTCGGCGGTGCAATCAGTTCGATGGACTTACAGTCTATTCTGGCAAATCTGTCCCCAGCAAGGGATCTTAGTGTGGGGAGATGGGTATTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTCAGCGCCGAGGAGGCGTCCCTCCAGAGAAGCCAGCAGCTAAGGGAACTCTACGAATCGCTGTCTGCTGGAGAAACCAACCAGCCAGCAAGGCGGCCATGTGCCGCCTTGTCGCCGGAGGACTTGACCGAGTCGGAGTGGTTCTACCTGATGTGTGTCTCTTTCTCATTTCCTCCTGGGGTGGGGTTACCGGGAAAGGCATATGCAAAGCGGCACCATATATGGCTTGCAGGAGCAAATGAGGTCGATAGCAAAGTCTTCTCTAGAGCTATTCTTGCTAAGAGTGCTCGCGTACAGACTGTGGTTTGCATTCCTTTAATGGATGGCGTGGTTGAATTTGGCACCACTGAGAAGGTTCAAGAGGACCTTGGATTCGTCCAACATGTAAAAAGCTTCTTCACAGATCATCAACTCCACAACCACCCCCCTAAGCCAGCACTCTCCGAGCACTCCACTTCGAATCCCGCCACCTCATCAGACCACTCGCGTTTTCATTCTCCGCCGATCCAGGCGGCATACGCGGCAGCTGACCCACCAGCAAGTAACAACCAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGAAGCTGAGTCCGACTCGGAGGCGGAAACGGGGCGAAACAATCGCAGGGTGAGGACCCAGAACACGGGGACTGAGGGCGTGGCAGGGTCTCACACGGCAGCGGAGCCGAGCGAGCTCATACAACTAGAAATGTCGGAGGGCATACGGCTGGGATCACCAGATGACGGCTCCAACAATCTGGACTCAGACTTTCACATGCTGGCTGTGAGCCAGCCAGGGAGCTCAGTAGACCATCAGCGCCGAGCTGACTCCTACAGGGCGGAGTCGGCTCGCAGGTGGCCGATGTTGCAGGACCCATTGTGCAGCAGCGGCCTCCAACAGCCTCCACCACAACCACCGACAGGGCCCCCTCCATTGGATGAATTATCACATGAGGACACACACTATTCACAAACCGTCTCAACCATCCTTCAACACCAGCCGAACCGGTGGTCGGAGTCGTCGTCGTCCGGATGCATTGCGCCATACTCCAGCCAATCAGCGTTTGCCAAGTGGACTACCCGCTGCGACCATCACCACCACCCCATGGCTGTGGAGGGCACCTCCCAGTGGCTGCTCAAATACATCCTCTTTAGCGTTCCCTTCCTCCACACCAAGTACCGCGACGAGAACTCTCCGAAATCCCGCGACGGCGACTCCGCCGGTCGGTTCCGCAAGGGAACGCCTCAGGACGAGCTCAGCGCCAACCACGTCCTCGCCGAACGCCGCCGCCGCGAGAAGCTCAACGAGCGGTTCATCATACTCAGATCGCTGGTGCCGTTCGTGACGAAAATGGACAAGGCTTCGATTCTCGGAGACACGATAGAGTACGTGAAGCAGCTTCGGAAGAAAATCCAAGATCTGGAGGCTCGAACACGGCAGATGGAGGTGGAACAGCGATCGAGAGGATCCGATTCGGTTAGGTCAAAGGAGCATCGCATCGGGTCCGGCGGTGTAGATCGGAACAGGGCGGTGGTGGCAGGGTCAGACAAAAGGAAGTTGAGGATAGTTGAGGGGAGCACCGGCGCGAAGCCAAAGGTGGTGGATTCACCACCGGCAGCGGTGGAAGGCGGAACAACCACCGTGGAGGTGTCGATAATAGAGAGTGACGCATTGTTGGAGATGCAATGTCCGTACAGGGAAGGGCTGTTGCTGGATGTAATGCAGATGCTCCGAGACCTTCGGCTCGAAACGACGACGGTTCAGTCGTCGTTAACCAATGGGGTCTTCGTGGCCGAATTAAGGGCTAAGGTGAAGGAGAATGCCAGTGGGAAGAAGGCAAGCATTATGGAAGTAAAGAGGGCAATAAACCAAATAATACCCCAGTGCTGA 2091 0.5629 MAAPPNSRLQSMLQSAVQSVRWTYSLFWQICPQQGILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPARRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYAKRHHIWLAGANEVDSKVFSRAILAKSARVQTVVCIPLMDGVVEFGTTEKVQEDLGFVQHVKSFFTDHQLHNHPPKPALSEHSTSNPATSSDHSRFHSPPIQAAYAAADPPASNNQEEEEEEEEEEEEEEEEEEEAESDSEAETGRNNRRVRTQNTGTEGVAGSHTAAEPSELIQLEMSEGIRLGSPDDGSNNLDSDFHMLAVSQPGSSVDHQRRADSYRAESARRWPMLQDPLCSSGLQQPPPQPPTGPPPLDELSHEDTHYSQTVSTILQHQPNRWSESSSSGCIAPYSSQSAFAKWTTRCDHHHHPMAVEGTSQWLLKYILFSVPFLHTKYRDENSPKSRDGDSAGRFRKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEARTRQMEVEQRSRGSDSVRSKEHRIGSGGVDRNRAVVAGSDKRKLRIVEGSTGAKPKVVDSPPAAVEGGTTTVEVSIIESDALLEMQCPYREGLLLDVMQMLRDLRLETTTVQSSLTNGVFVAELRAKVKENASGKKASIMEVKRAINQIIPQC* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0130 696 MobiDBLite consensus disorder prediction 547 575 - -
Vvi7g0130 696 MobiDBLite consensus disorder prediction 388 410 - -
Vvi7g0130 696 MobiDBLite consensus disorder prediction 461 491 - -
Vvi7g0130 696 Coils Coil 524 551 - -
Vvi7g0130 696 Pfam Helix-loop-helix DNA-binding domain 488 535 IPR011598 GO:0046983
Vvi7g0130 696 Coils Coil 238 270 - -
Vvi7g0130 696 Gene3D - 486 557 IPR036638 GO:0046983
Vvi7g0130 696 MobiDBLite consensus disorder prediction 240 266 - -
Vvi7g0130 696 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 487 552 IPR036638 GO:0046983
Vvi7g0130 696 MobiDBLite consensus disorder prediction 365 379 - -
Vvi7g0130 696 MobiDBLite consensus disorder prediction 204 223 - -
Vvi7g0130 696 MobiDBLite consensus disorder prediction 547 571 - -
Vvi7g0130 696 SMART finulus 491 540 IPR011598 GO:0046983
Vvi7g0130 696 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 485 534 IPR011598 GO:0046983
Vvi7g0130 696 MobiDBLite consensus disorder prediction 194 296 - -
Vvi7g0130 696 MobiDBLite consensus disorder prediction 461 479 - -
Vvi7g0130 696 MobiDBLite consensus disorder prediction 330 410 - -
Vvi7g0130 696 PANTHER TRANSCRIPTION FACTOR TT8 3 695 - -
Vvi7g0130 696 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0130 Vvi-Chr7 1387099 1392624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0130 309 693 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.113 1.45e-58 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g0130 bHLH-MYC_N 9.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0130 - - vvi:100251098 1309.28