Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0125 ATGGAAAAGGTTGGAGTAGCGTCTGCAAGGAAAAGCCTGAAGCGAAAGCTCGAAGAGGAGTTCGAAGAGGATGGCAGATTGGATGCTCTCTCACAACCCCACGCGCTTCGCGAACTGGTGCGCGAGGTCGGCGTGCATGTCAGCGTTCTCAACTCTGCTATTTCTTCGTCCGAAGCCGATCGATCCGCTGCTAAGCGCGCCGTTCATGTTCTGACCGAGCTTGCAAAGAACGATGAAATTGCGAATGTGATTGTTGATTGTCAAGTTGTGCCGGCTCTGGTTGGGCATCTTCAGTCACCTCCACCCTTGGTAGAAGGTGACAGCAGCCCGATTCCATTTGAGCATGAGGTCGAGAAAGGGTGTGCCCTTGCACTCGGACTCCTTGCTGTAAAGCCAGAGCATCAACAACTCATTGTCGATGCAGGGGCTCTGCCTCATCTTGTGGAACTCCTAAAGAGGCATAGGTCTGGTTATAAAACTCGGGCTGTCAATAGTGTTGTAAGGAGAGCAGCCGATGCAATAACAAACCTAGCTCATGAGAACAGTAACATCAAAACCCGTGTCAGGATTGAAGGTGGTATCCCGCCCCTTGTTGAGTTGCTTAAATTCATTGACACAAAGGTTCAGAAAGCAGCTGCAGGAGCTTTGCGAACCCTCGCATTTAAAAATGATGAAAATAAAAATCAGATTGTGGAATGCAATGCTTTACCTATGCTTATTCTAATGCTCAGATCTGAGGACACAGGTGTACACTATGAAGCGATTGGTGTGATTGGGAATCTGGTTCACTCATCCCCCAACATAAAGAAAGACGTCCTTTTTGCTGGAGCTTTACAACCTGTTATTGAGTTGCTCAGGTCCAGCTGTTCTGAGAGCCAAAGAGAGGCAGCTTTGTTACTTGGGCAATTTGCTGCTGCTGATTCAGATTGCAAGGCACACATTGTACAGAGAGGTGCTGTCCAACCATTAATTGATATGCTCCAGTCTCCTGATGTGCAGCTTAGGGAAATGTCAGCTTTTGCTCTAGGGAGGTTGGCACAGGACCACCACAACCAAGCTGGAATTGCTCATAATGGAGGTATGGTGCCATTGTTGAAGCTTCTTGATTCAAGAAATGGATCTCTTCAACACAATGCTGCATTTGCTCTGTATGGTCTTGCAGATAATGAGGATAATGTTGCAGACCTTGTCAGAGTAGGAGGTGTTCAAAAACTTCAAGAGGGGGTATTCAATGCCCAACCAACTAAGGATTGTGTGGCAAAGACATTGAAAAGATTAGAGGAGAAGATTCATGGACGAGTAATGAACCATCTATTATATCTAATGAGGGTAGCAGAGAAGTCTGTACAAAGACGAGTTGTTCTGGCTCTTGCTCATCTGTGTTCCCTTGAACATCAAAAAATTATTTTTATTGATGGCCATGGTATAAATCACTATGCCAACTCTTTTGGTCTGCATTTTGTCTTGTACAGAAGTTTATTCTAA 1485 0.4559 MEKVGVASARKSLKRKLEEEFEEDGRLDALSQPHALRELVREVGVHVSVLNSAISSSEADRSAAKRAVHVLTELAKNDEIANVIVDCQVVPALVGHLQSPPPLVEGDSSPIPFEHEVEKGCALALGLLAVKPEHQQLIVDAGALPHLVELLKRHRSGYKTRAVNSVVRRAADAITNLAHENSNIKTRVRIEGGIPPLVELLKFIDTKVQKAAAGALRTLAFKNDENKNQIVECNALPMLILMLRSEDTGVHYEAIGVIGNLVHSSPNIKKDVLFAGALQPVIELLRSSCSESQREAALLLGQFAAADSDCKAHIVQRGAVQPLIDMLQSPDVQLREMSAFALGRLAQDHHNQAGIAHNGGMVPLLKLLDSRNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQEGVFNAQPTKDCVAKTLKRLEEKIHGRVMNHLLYLMRVAEKSVQRRVVLALAHLCSLEHQKIIFIDGHGINHYANSFGLHFVLYRSLF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0125 494 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Vvi7g0125 494 Gene3D - 244 481 IPR011989 -
Vvi7g0125 494 Gene3D - 27 162 IPR011989 -
Vvi7g0125 494 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 234 276 IPR000225 GO:0005515
Vvi7g0125 494 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 318 360 IPR000225 GO:0005515
Vvi7g0125 494 Pfam Armadillo/beta-catenin-like repeat 307 346 IPR000225 GO:0005515
Vvi7g0125 494 Pfam Armadillo/beta-catenin-like repeat 188 220 IPR000225 GO:0005515
Vvi7g0125 494 Pfam Armadillo/beta-catenin-like repeat 223 262 IPR000225 GO:0005515
Vvi7g0125 494 Pfam Armadillo/beta-catenin-like repeat 132 178 IPR000225 GO:0005515
Vvi7g0125 494 SUPERFAMILY ARM repeat 47 407 IPR016024 -
Vvi7g0125 494 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 192 IPR000225 GO:0005515
Vvi7g0125 494 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 192 227 IPR000225 GO:0005515
Vvi7g0125 494 SMART arm_5 77 130 IPR000225 GO:0005515
Vvi7g0125 494 SMART arm_5 265 305 IPR000225 GO:0005515
Vvi7g0125 494 SMART arm_5 348 388 IPR000225 GO:0005515
Vvi7g0125 494 SMART arm_5 131 179 IPR000225 GO:0005515
Vvi7g0125 494 SMART arm_5 307 347 IPR000225 GO:0005515
Vvi7g0125 494 SMART arm_5 223 263 IPR000225 GO:0005515
Vvi7g0125 494 SMART arm_5 181 221 IPR000225 GO:0005515
Vvi7g0125 494 Gene3D - 163 243 IPR011989 -
Vvi7g0125 494 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 477 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0125 Vvi-Chr7 1339352 1343479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0125 194 417 U-box Gene Family AT1G23030 28.889 5.82e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0125 - - vri:117917619 935.636