Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0108 ATGAAGGAGGGTTTGCGATCTGGGAGTTTAGCGGCCCAGCTCGAGAGGGGGAATGGGCCTTCGAGCCGTGTGATTGTTCGGAGAAGGGGAAATGAGGTGATTAACAATGGTGGTTTAGAGAGTGAAGAAAAGGGTTTGAATTCAAATGATCAGAGATGCCCGCTATTGATTTCAAGTGATTTGGAGGCGAATGGAGAGTCCAAGGAAACTGCAATTGTGCCTTTGCCAAAGGAAAGTGTGAAAGTTGAGTGTGAATGTGAAGAAGTTGGCAAAGCTAGCGAACCGGGACGACGTGGGAGGAAAAGGGGTAGGAAGAGTAAGTCTGAACGTGGTGAAGGTGGGATTGGGGATTGTAAGAAGGTGAAGGAGTCTTTGGAATGTAAAGTTGAGGTTGTTGGTAGGGTTCTACGGTCAAAGACTGTGGCAATGCAAGCCATTCAGATGGAAAAAAATGGGAGTGGGAAAGAAGTTGATCTTGAACAGAGTGAAAGCGATATGGTTGGCCAGAGGGACAGTGGTAGTGCTCATTATGACAAGAAAAGGGTGAAGATAGAGGAAGATGAATCTGATGGTGGCTCAAGAAAGAAGTTGAAAGGGAAACAGGGGAGACCTGTTCATGTGGAACGAAGACGGGGGAGGCCTCGTAAGGATCAAGGGAAAAATGTGGTGTTGGAGAGGGTACTTGATGAGAAAGAAGAGGCAAGTGGGTCAGAGAAAGTGAAACGAAAACGTGGCAGGCCTCCTAAGGTACTGGGGAAAAATGTGGTGTTAGAGAGGGTAAAGAACAAAAAGGCAAGTGGGTCAAAGAGAAACACGAGGGCCTCTAAGTTGGAAGGCATTGTCCAGCGGAATGGACCAAACAGTCATATAGGGACAGAATCAAGCAGATTTTCATTAACTGAAAAAAGTAAATCCCATGAACTGGGCATACAGGAGCATGAAACTTCATCAGGTGTAAGAGGCAAGGGAGTGGGTGCTTTTGGTTTTAGGAAAGGGAAAAGGGGAGGAAGAAAAGCTAAACACAAGAAAGGAAAAAGCAAAGATGGTAGAGCTGCCGAAAAGAAGTTAGTAAGAGAGCAAATAATAGATATGCTTATGAGGGCGGGTTGGACAATTGATTATAGGCCTAGGAGGGATAAAGAGTATAATGATGCAGTGTATACAAGTCCTACAGGGCGGGGCTACTGGTCGGTCACCTTGGCTTACAATGTGCTTAAAAGCCACTATGAAGATGGTCATTGTGAGCCTGGTTTTACATTTACTCCAATACCAGATGGGGTTCTCACGAAACTGAAGAGGAATGCTAGTAAGGGAAAGAAGAGAAGATTGAAATTGGAGCAAGAATATGACAGCGGAGGTGAGATGAAATGTTGTATCGTAAAAAAGAAATCTGGAAAAAATAAACATGCTGGAGGGAAGTCATCAAACAGGAAAATGAAAGGGAGATCATCTCTTTCTGGGCAAGATAATTTAACTGGGATGCTACATAAGGGAATATTAACATCAGTCAGGAACCGCAAATTACAAAGAACTCAAAATACAAAACGATTTGCTCTTTTGGCCCGCCACTCTAAGGAAGGGTTGACTACAGATACTGATGGCTATGTACCATATTCTGGGAAACGAACACTGCTTTCCTGGATGGTTGATTTGGGAACTGTGCCACTCAATGCAAAGGTGCAATATATGAACCGAAGAAAAACACGGGCACTGCTTGAGGGTTGGATTTCAAGAGATGGCATTCGCTGTGGTTGCTGTAGTGAAATATTCACAATTTCGAAATTTGAGATTCATGCAGGAATGAAATTGTGCGAACCATCTCAAAATATAATTTTAGAGACTGGGATTTCTCTGTTACAGTGCCAGCTAGATTCATGGAATAAACAAGAGGAGTCTGAAAGAAGTGGGTTCCACCTTGTAGACGTTGGTGCTGATGATCCAAATGATGATACCTGTGGCATATGCGGAGATGGTGGGGACTTGATCTGTTGTGATGGTTGTCCATCAACATTCCACCAAAGCTGCTTGGATATACAAAAGTTCCCTTCAGGTGACTGGCACTGTATATATTGTTCATGCAAGTTTTGTGGAATGTTCAGTGGGAACACAGATCAAATGAACTACAATCTTGATGTAAACGATTCTGCATTACTTACTTGCCAATTGTGTGAGGAAAAATATCATCACATGTGTACTCAGGGAGAAGATTCTATACTTGATGATTCCAGTAGTCCTTCCTTTTGTGGGAAAACATGCCGAGAGCTCTTTGAGCAACTACAGATGCTTCTTGGGGTTAAACATGAATTGGAAGATGGATTTTCATGGACTCTTGTTCAGCGAACTGAGGTTGGCTTTGATATATCCCTTAATGGAATACCTCAGAAGGTTGAATGCAATTCCAAGCTAGCTGTTGCATTGTCTATTATGGATGAGTGCTTTTTGCCTATAGTTGATCAAAGAAGTGGGATCAATTTGATTCATAATGTTCTCTATAATTGTGGTTCAAACTTTAATAGGCTCAATTATAGTGGCTTCTTCACTGCTATTCTTGAGAGGGGGGAGGAGATCATATCTGCTGCATCTATTAGGATCCACGGAAACAAGTTAGCTGAGATGCCATTCATTGGAACTCGCCATATTTATAGGCGCCAAGGGATGTGCCGTCGGCTTCTGAATGCAATTGAATCTGCTCTTCACTCTCTCAATGTTGAGAAATTGGTCATACCTGCTATCTCCGAACTCATGCAAACATGGACTTCAGTTTTTGGTTTCAAGCCTCTTGAAGTGTCAAGCAGAAAAGAAATGAGGAACATGAATATGTTAGTCTTCCATGGTACAGACATGCTACAGAAACCACTATTGAAAGATCAGTCCGCCGAAGAAAGCATGATCCCCAGTGCAGTTTTGGAGTCCAATGAACTTAAGAAGGATCTTGATATTAAGCATGGGGTAGCAAATAATTCTGATAAGACATGTTCCCCTGGGTCTGATTTGAATATTTCCAGCAAGGGTGCCAATCTTTCTCTGGCAATATGCAATGGGCCTGCTGCTGTGGAATCTGGTTCACAGCTTAATGAAGGCTCCTTGAATGATTCATCTGACATCACAAGTGAGACAACCAATTTCCCAGAATCTGCTACTAATGAAAAAAGTCTAGTCCATGATAATCTGGAGGGGAAAAATAGAACTGTCATATGTCCTCAGCCTTCTGCTTGTGATGCTCATGCAGTAAATGCACACTCAGCTACTGAAGGGATTGATAAACATCAAACTGCTGTTGATGATTCTATCATTCTGGCTCCTGCTGAGAGGACTGTTGAATCTGACTCCAAATTGAATCAACAGAGAACATGTGACATGGAAAAAAAACCACTTGGAGTTTCTTGCCTTGGGTCTGAAGCAACTGGCTGTGAGAAAGAAGTTTTTCATGCATGCAAGGAGGGTAAGGAAACTGTTGGTTTTGAGCTGAAAAATGACATTATAAAACAAAGTAATAATTCCTTGGATGACAATATTAATCCTCAACACCTGGATGTGGATTTTTTACATGGGTCAGGTGAGAATACTGCTTGCCTTAATTTTGAGGCTAGAAGTCAGATGTCTGATGATGCAAAGGATGGAAAGCACAGTGATTCTCAGCAGTTGCAGGTCATAGGATATACTTTGGAAGCTGATGACAAGGTGCTAAATACTCTCAAAGCTGAGGATGGGGTTGCGGTTGTTGGTCCTAATCCTTCAGCACCAGGTGGGGCATGTCCAACATCTACTCAGTGTTGTTCTGAGATTCTGTGCCAGAGGTGCACCTCTTCAAATGATGCAGTTTCTCACCTGATGCCCCCATCTACTCCCCAAAAAGTGCGAGATGTAGCAAATGATCCCTGCGCAGCTTTGTTGGTTGGCTGTGATCTTGGATCTTCCTGTCAGGGTGATGGACTTGATTCTCATAAACTAGAATATGTTGCTGCTTCAGTTAATACTAATTGCCAACCTTCTGATGCCGCCACAGAACCTAATGAACATCTCCAGCCCATGGAGTTGTCATCAGGCCTTGACAGAAATGATGTTCCTGAGTCTGATGCATGTGCCTTCACTTGTCCTGTTGGAATGTGCCATCAAACTCCTAAAGACTCCCATAAGGCCAGTGAAACCGGCCTTTGTTCTCATGATGATGGTTTTCCTCCAGACAGGCCTCAGACTGTCATTGAGTCTGATTCTGTGGCTGACCACTCAAGCTCAGGTTCTGGTATGGCCCTTCTCTGTGCCTCCGGTGGGTGTAAAGCAGGTGGTGCTCCTGAGGTGATGGTAGTTTCAAACCAGGCTAGTTAA 4326 0.4337 MKEGLRSGSLAAQLERGNGPSSRVIVRRRGNEVINNGGLESEEKGLNSNDQRCPLLISSDLEANGESKETAIVPLPKESVKVECECEEVGKASEPGRRGRKRGRKSKSERGEGGIGDCKKVKESLECKVEVVGRVLRSKTVAMQAIQMEKNGSGKEVDLEQSESDMVGQRDSGSAHYDKKRVKIEEDESDGGSRKKLKGKQGRPVHVERRRGRPRKDQGKNVVLERVLDEKEEASGSEKVKRKRGRPPKVLGKNVVLERVKNKKASGSKRNTRASKLEGIVQRNGPNSHIGTESSRFSLTEKSKSHELGIQEHETSSGVRGKGVGAFGFRKGKRGGRKAKHKKGKSKDGRAAEKKLVREQIIDMLMRAGWTIDYRPRRDKEYNDAVYTSPTGRGYWSVTLAYNVLKSHYEDGHCEPGFTFTPIPDGVLTKLKRNASKGKKRRLKLEQEYDSGGEMKCCIVKKKSGKNKHAGGKSSNRKMKGRSSLSGQDNLTGMLHKGILTSVRNRKLQRTQNTKRFALLARHSKEGLTTDTDGYVPYSGKRTLLSWMVDLGTVPLNAKVQYMNRRKTRALLEGWISRDGIRCGCCSEIFTISKFEIHAGMKLCEPSQNIILETGISLLQCQLDSWNKQEESERSGFHLVDVGADDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQKFPSGDWHCIYCSCKFCGMFSGNTDQMNYNLDVNDSALLTCQLCEEKYHHMCTQGEDSILDDSSSPSFCGKTCRELFEQLQMLLGVKHELEDGFSWTLVQRTEVGFDISLNGIPQKVECNSKLAVALSIMDECFLPIVDQRSGINLIHNVLYNCGSNFNRLNYSGFFTAILERGEEIISAASIRIHGNKLAEMPFIGTRHIYRRQGMCRRLLNAIESALHSLNVEKLVIPAISELMQTWTSVFGFKPLEVSSRKEMRNMNMLVFHGTDMLQKPLLKDQSAEESMIPSAVLESNELKKDLDIKHGVANNSDKTCSPGSDLNISSKGANLSLAICNGPAAVESGSQLNEGSLNDSSDITSETTNFPESATNEKSLVHDNLEGKNRTVICPQPSACDAHAVNAHSATEGIDKHQTAVDDSIILAPAERTVESDSKLNQQRTCDMEKKPLGVSCLGSEATGCEKEVFHACKEGKETVGFELKNDIIKQSNNSLDDNINPQHLDVDFLHGSGENTACLNFEARSQMSDDAKDGKHSDSQQLQVIGYTLEADDKVLNTLKAEDGVAVVGPNPSAPGGACPTSTQCCSEILCQRCTSSNDAVSHLMPPSTPQKVRDVANDPCAALLVGCDLGSSCQGDGLDSHKLEYVAASVNTNCQPSDAATEPNEHLQPMELSSGLDRNDVPESDACAFTCPVGMCHQTPKDSHKASETGLCSHDDGFPPDRPQTVIESDSVADHSSSGSGMALLCASGGCKAGGAPEVMVVSNQAS* 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0108 1441 CDD NAT_SF 849 908 - -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 172 197 - -
Vvi7g0108 1441 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 840 930 IPR016181 -
Vvi7g0108 1441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 750 IPR013083 -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 308 352 - -
Vvi7g0108 1441 SUPERFAMILY FYVE/PHD zinc finger 642 698 IPR011011 -
Vvi7g0108 1441 ProSiteProfiles Zinc finger PHD-type profile. 649 694 IPR019787 -
Vvi7g0108 1441 SMART PHD_3 693 753 IPR001965 -
Vvi7g0108 1441 SMART PHD_3 651 692 IPR001965 -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 87 117 - -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 1 29 - -
Vvi7g0108 1441 PANTHER PHD FINGER PROTEIN 12 337 1123 IPR042163 GO:0003714|GO:0045892
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 211 241 - -
Vvi7g0108 1441 CDD PHD1_AIRE 652 691 - -
Vvi7g0108 1441 FunFam Increased DNA methylation 1 642 694 - -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 1022 1047 - -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 272 296 - -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 331 348 - -
Vvi7g0108 1441 Pfam Tify domain binding domain 574 623 IPR032308 -
Vvi7g0108 1441 Coils Coil 428 448 - -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 463 490 - -
Vvi7g0108 1441 MobiDBLite consensus disorder prediction 147 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0108 Vvi-Chr7 1100281 1114470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0108 143 963 PHD Transcription Factor Family AT4G14920 42.188 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0108 - - vvi:100853644 2802.31