LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g0086	ATGGAAATAAAGGCAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTAGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTACTGTACTCTGTGGATCCTGTGCTGCAGACCCTAACATTTGAGTACGTGGAGGGTCCAGCTGTCAAAGATGTATTTCTTGATTTTGGGTTGCATGGTGTTGCTGAAGAACGGATGGATGATATAGCAAAGCAGATTGGTGATGCAATTGGGAAGTTGCATGATGGTAACCTTATTCATGGTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAAGCTGTTGATTTATATGTACTTGAGCGGGCCTTGCTATCAATGCATTCTTCATGTGGGAATGTGATGGATCGCATACTTGCTGCATATCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAGTGCGACAAAGAGGTCGAAAGCGCACAATGGTTGGCTAA	681	0.4391	MEIKADGKESSLILLKQGAEARVFESNFVGRRCVVKERFSKKYRHPSLDSKLTLKRLNAEARCMTRARRLGVATPVLYSVDPVLQTLTFEYVEGPAVKDVFLDFGLHGVAEERMDDIAKQIGDAIGKLHDGNLIHGDLTTSNMLIQSGTNQLVLIDFGLSFTSTLHEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG*	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g0086	226	Gene3D	Phosphorylase Kinase; domain 1	20	92	-	-
	Vvi7g0086	226	SMART	serkin_6	9	225	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi7g0086	226	FunFam	Protein kinase superfamily protein	107	223	-	-
	Vvi7g0086	226	Pfam	Protein kinase domain	48	163	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi7g0086	226	SUPERFAMILY	Protein kinase-like (PK-like)	15	174	IPR011009	-
	Vvi7g0086	226	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	6	226	IPR022495	GO:0004674
	Vvi7g0086	226	NCBIfam	KEOPS complex kinase/ATPase Bud32	18	220	IPR022495	GO:0004674
	Vvi7g0086	226	ProSiteProfiles	Protein kinase domain profile.	9	226	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi7g0086	226	FunFam	TP53-regulating kinase isoform X1	20	92	-	-
	Vvi7g0086	226	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	133	145	IPR008266	GO:0004672\|GO:0006468
	Vvi7g0086	226	Gene3D	Transferase(Phosphotransferase) domain 1	100	223	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g0086	Vvi-Chr7	969754	971484	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDKL-Os	Vvi7g0086		Pkinase	8e-11	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g0086	K08851		-	vvi:100852781	443.736