Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0075 ATGGATCAGTATGAGATACTAGAGCAGATTGGGAAAGGTTCCTTCGGTTCTGCTCTTCTTGTGAGACATAAACATGAAAAAAAGAAGTATGTCCTGAAGAAAATCCGCCTTGCTCGCCAGACTGATAGGACCCGAAGATCTGCCCATCTGGAGATGGAGCTGATTTCTAAAGTACGAAATCCATTTATCGTTGAGTACAAAGATTCTTGGGTAGAGAAGGGTTGCTATGTATGCATTGTTATAGGGTACTGTGAGGGAGGAGACATGGCAGAAGCTATAAAAAGAGCCAATGGTGTTCATTTTCCTGAAGAGAAACTTTGCAAGTGGCTAGTTCAACTCCTGACGGCACTTGAATATTTGCATGCAAACCATATTCTTCATCGTGATGTCAAGTGTTCGAATATATTTTTGACAAAGGACCAAGACATACGTCTAGGTGATTTTGGTCTTGCTAAGATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGGACTCCCAGTTATATGTGCCCTGAGCTTCTTGCTGATATACCATATGGTTCCAAGTCAGATATCTGGTCTCTAGGGTGCTGTATATATGAAATGACTGCTCACAGGCCTGCATTTAAAGCCTTTGATATGCAAGCTCTGATAAACAAAATAAACAAGTCTATAGTGGCTCCACTTCCAACCATGTATTCTGGTGCATTTCGGGGACTTGTAAAAAGCATGCTGCGGAAAAATCCTGAACTTAGACCAAGTGCTGCAGAGTTGCTCACTCACTCACACCTTCAACCTTACATCCTTAAGATCCATCTGAAATCCAATAGCCCTAGACGAAACACTTTTCCTTTCCAATGGTCTGATTCCAACTACATCAAGAAAACTAGATTCCTGGAGCCAGAAGCTGTTCCTATGTTCTCTGACAGAGAGAAGCGGAGATCATTCAGCAATGACAGGACCTTGAATCCTAGTATATCTGGAACTGAGCAAGACTCTCCTTGTTCTAGTCAAAAGATGCAGGAATTCTCCAGTCATTTAAATCGGAAGTTTGCTGAATTATCTGTTGGCAGCACTCATGAAGACATTGGTATTGATAAATCAGTGGTCACAAAGTTCTCAAGTGCTACCAAAACCCCTAGGTCAACACCATCAAAAACTTCTTCTACTCCTAGGAGACAGACAGCAACATCAAAGATATCACGGATTGGCTCAAATCATGATTCATTTCCAGTGTCACATACTCCAGTGAGCAAGTCTTCCTGGTCAACTCGAAGAGCATCACTTCCATTTCCAACAAGAGCTGCTACCTTAGAAACCCCTTACAGACCCAATGTTCGCCTCCTCCGCAGCGTGGAGTCTCCAGATATCTCTGTTAATGCCCCAAGAATTGATAGGATTGCAGAATTTCCTCTAGCCTCTTGTGATGAGCCTCTTTTCCCTATCCGTAAAACTTCATCAACATCTGCTCAATGCTCTTCTAACTCACCAGATAGCGGTGACTGTTCAATCACAAAGGACAAGTGTACAGTACAGATTTTGGACAAAGCCTTTGTCAGGCAGAATTTCACTGATGCAGACCATGGAGTTCCTCGAAATGGAAGTGAATGCTCAGAGCACAACCCAACTACTGGTGTTTCTAGCCGCTCATCTTCAGATTCACGACAGCGCAGGTTTGACACCTCATCATACCAGCAGCGCGCTGAGGCATTAGAGGGGTTGCTCGAGTTCAGTGCAAGGCTCTTGCAACAAGAAAGGTTCGATGAACTTGGGGTGCTGCTGAAGCCATTCGGACCAGAGAAAGTTTCTCCCAGGGAAACTGCTATATGGTTGACGAAGAGCTTCAAGGAGACTGCAGCCTAG 1845 0.4396 MDQYEILEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHLEMELISKVRNPFIVEYKDSWVEKGCYVCIVIGYCEGGDMAEAIKRANGVHFPEEKLCKWLVQLLTALEYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHRPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSAAELLTHSHLQPYILKIHLKSNSPRRNTFPFQWSDSNYIKKTRFLEPEAVPMFSDREKRRSFSNDRTLNPSISGTEQDSPCSSQKMQEFSSHLNRKFAELSVGSTHEDIGIDKSVVTKFSSATKTPRSTPSKTSSTPRRQTATSKISRIGSNHDSFPVSHTPVSKSSWSTRRASLPFPTRAATLETPYRPNVRLLRSVESPDISVNAPRIDRIAEFPLASCDEPLFPIRKTSSTSAQCSSNSPDSGDCSITKDKCTVQILDKAFVRQNFTDADHGVPRNGSECSEHNPTTGVSSRSSSDSRQRRFDTSSYQQRAEALEGLLEFSARLLQQERFDELGVLLKPFGPEKVSPRETAIWLTKSFKETAA* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0075 614 Gene3D Transferase(Phosphotransferase) domain 1 84 275 - -
Vvi7g0075 614 SUPERFAMILY Protein kinase-like (PK-like) 1 319 IPR011009 -
Vvi7g0075 614 MobiDBLite consensus disorder prediction 530 546 - -
Vvi7g0075 614 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi7g0075 614 MobiDBLite consensus disorder prediction 313 336 - -
Vvi7g0075 614 MobiDBLite consensus disorder prediction 519 557 - -
Vvi7g0075 614 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vvi7g0075 614 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0075 614 SMART serkin_6 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0075 614 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Vvi7g0075 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vvi7g0075 614 CDD STKc_Nek 3 258 - -
Vvi7g0075 614 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 570 - -
Vvi7g0075 614 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0075 614 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vvi7g0075 614 MobiDBLite consensus disorder prediction 368 415 - -
Vvi7g0075 614 MobiDBLite consensus disorder prediction 304 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0075 Vvi-Chr7 852981 859488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0075 10 259 MAP Kinase Kinase Kinase AT1G53570 30.196 8.86e-35 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vvi7g0075 Pkinase 1.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0075 K08857 - vvi:100852976 1188.33