Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0053 ATGGGTGAAAAATTTTGGTTGAATGAAGAGGAAAAGGCTATGGTGGAGTCAGTATTGGGTGCAGAAGGGTGGGAGTTTTTGATCTCGTGCGCTTCTGATAAAACCCATTTGTCAGAATCGGGTGTCGCATCCAGTGATGGTGGTGTCCAGAAGGGGCTTCGTCAGCTTGTTGAAGGGTCTAATTGGAGTTACGCCATATTCTGGCGTGTTTCGAGGGTGAAGGATGTGTTGATTTGGGGTGATGGATATTGTAGAGAGGCAAAAGGGGAGGTTGGTGATGGTGGTTTGGAGGAAGTGGGGAAGAAGAAGGAGGTGCTGAAGAAGCTTCATGAGTATTTTGGGGTTGGGGAGGAGGATAAATACTGGGCTAAATTGGATTTGTTGTCAAACATCGAGATGTTTTATCTTACTTCGATGTTTTATTCGTTTTCGGGTGATTTGCAGTATGGCCCTGCTCTGGTGCTTAAGTCTGGGAGATGGGTTTGGGTTGTTGATGCAGTTGGTTGTTCAGATCAGTATCGGGCAAGGTCGGTTTTGGCAAGATTGGCAGGGTTTCAGACAGTTGTGTTTGTGCCAGTGAAGGATGGGGTGATTGAGGTTGCTTCTTTAATGTTGGTTAAGGAGGATGAGAATGTTGTGAAGATGATTAAGGGTGTATTTGGGGGGATGAATTTTGGGCAGGCGAAGGTGTATCCAAAAATATTTGGGCATGAACTTAGTCTTGGTAGTGGGGCAAAGTCACGGTCAATGAGTATTAATTTTGCCCCCAAGTTGGAAGGGGATTCAGGGTTTGGTGCAGAATCATATGATGTCCAAGGCTTGGGTTCAAATCAGGTTTATGGGAATTCCTCTAATGGGTGTATGAATGAGGATAATGAGGGGAAAATATTCCCTCAGCTCAATCAAATATTTAATGCTCAAGTATTGGTTTCTGGTTTTGAGCAGCCTAAGGATGACTTGTTGCCTAGGGTTGATGAACGAAAACCTAGGAAGAGAGGAAGGAAGCCAGCTAATGGGAGAGAAGAGCCATTGAATCACGTGGAAGCTGAGAGGCAGAGGAGGGAGAAGCTTAACCAAAGGTTCTATGCATTAAGAGCTGTTGTTCCTAATATATCCAAGATGGATAAGGCCTCGTTGCTTGGTGATGCCATTTCATACATTACTGATCTCCAGATGAAGATTCGGATATTGGAAGCTGAGAAGGAGATTGTAAACAATAAGCAAAACCAATCACCTGTGCCACAGATCGACTTTCAGGATAGGCAGGAGGACACAGTTGTAAGAGTTAGCTGTCCCTTGGATGCTCATCCTGTTTCTAGAGTCATAAAGACGCTTAAGGAACACCAAGTTGTAGCTCCAGAGGCTGAAGTTTCCACTATGGAAAATGATAAGGTCCTTCACACGTTCTCCATTCGGACTCAAACTGGTGCTGCCGAGTGCTTGAAGGAGAAGCTGGTAGCTGCCCTTTCAAAATGA 1476 0.4492 MGEKFWLNEEEKAMVESVLGAEGWEFLISCASDKTHLSESGVASSDGGVQKGLRQLVEGSNWSYAIFWRVSRVKDVLIWGDGYCREAKGEVGDGGLEEVGKKKEVLKKLHEYFGVGEEDKYWAKLDLLSNIEMFYLTSMFYSFSGDLQYGPALVLKSGRWVWVVDAVGCSDQYRARSVLARLAGFQTVVFVPVKDGVIEVASLMLVKEDENVVKMIKGVFGGMNFGQAKVYPKIFGHELSLGSGAKSRSMSINFAPKLEGDSGFGAESYDVQGLGSNQVYGNSSNGCMNEDNEGKIFPQLNQIFNAQVLVSGFEQPKDDLLPRVDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYITDLQMKIRILEAEKEIVNNKQNQSPVPQIDFQDRQEDTVVRVSCPLDAHPVSRVIKTLKEHQVVAPEAEVSTMENDKVLHTFSIRTQTGAAECLKEKLVAALSK* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0053 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 413 IPR036638 GO:0046983
Vvi7g0053 491 Coils Coil 387 407 - -
Vvi7g0053 491 Pfam Helix-loop-helix DNA-binding domain 345 391 IPR011598 GO:0046983
Vvi7g0053 491 CDD bHLH_AtAIB_like 338 411 - -
Vvi7g0053 491 Gene3D - 334 408 IPR036638 GO:0046983
Vvi7g0053 491 MobiDBLite consensus disorder prediction 319 352 - -
Vvi7g0053 491 FunFam Transcription factor bHLH13 334 408 - -
Vvi7g0053 491 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 220 IPR025610 -
Vvi7g0053 491 PANTHER MYC 38 488 IPR045084 GO:0003700|GO:0006355
Vvi7g0053 491 SMART finulus 347 396 IPR011598 GO:0046983
Vvi7g0053 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 390 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0053 Vvi-Chr7 686775 688250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0053 1 491 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 52.800 5.69e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g0053 bHLH-MYC_N 1.4e-38 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0053 - - vvi:100254474 952.584