Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0040 ATGGCATCCGAAGAGCCTACCGTAGCTGTTGAGCCTGTGGCAGAACCAGAGGCGGCCGAGCCGGCGGAGGAGAACCCTGCGCCGAAGGCTGCAAAAACCAAGAAGGCTAAGGAGCCGAAGGCTAAGAAGCCGGCCGGTGCGAAGAAGCCTAGGAGTCCTCCTACGCATCCTCCGTATATTGAGATGATCACGGAGGCGATCGTGGCGTTAAAGGAGAAATCTGGTTCGAGTCAGTACGCGATCGCGAAGTTCATAGAGGAGAAGCATAAGCAACTTCCGCCCAACTTCAAGAAGCTTTTGCTCATTCATTTGAAGAAGTTTGTGGCTGCTGGGAAGCTCGTGAAGGTGAGAGGCTCGTACAAGCTTCCCCCCAGTCGACCTTCGGCTCCGAAGCCGACGGGTGCTGCTCCGGCTAAGAAGAAGGCTGTGGCAACGAAGCCTAAAACTGCTGCCAAGCCGAAAGAAGCTAAGAATACGAAGGCGAAGAAGGCGCCAGCCAAGCCCAAGGCTTCCGTGCCTAAGCCTAAAGCAGCTGCTAAGACGAAGGCAGCTGCCAAGCCCAAAGTTGCTCCAGCTAAGCCTAAGGTTCCTGCCAAGCCCAAGGCGGCTGCTAAGACGAAGACTGTGACGAAGCCCAAGCCTAAGCCGAAGGAGAAGCCAGCTAAGGCTGCGCGGACGTCCACCAGGACTACGCCGGGGAAGAAGGCTGCCCCTCCGAAGCCAGCACTGAAAAAAACTCCAGTGAAGAAAGCCCCGGCCAAGAGTGTAAAGCCCAAGAGTGTCAAATCTCCGGCAAAGAAAGCCGCAGCCAAGAAGGCGAAGAAGTGA 828 0.5628 MASEEPTVAVEPVAEPEAAEPAEENPAPKAAKTKKAKEPKAKKPAGAKKPRSPPTHPPYIEMITEAIVALKEKSGSSQYAIAKFIEEKHKQLPPNFKKLLLIHLKKFVAAGKLVKVRGSYKLPPSRPSAPKPTGAAPAKKKAVATKPKTAAKPKEAKNTKAKKAPAKPKASVPKPKAAAKTKAAAKPKVAPAKPKVPAKPKAAAKTKTVTKPKPKPKEKPAKAARTSTRTTPGKKAAPPKPALKKTPVKKAPAKSVKPKSVKSPAKKAAAKKAKK* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0040 275 SUPERFAMILY "Winged helix" DNA-binding domain 52 132 IPR036390 -
Vvi7g0040 275 MobiDBLite consensus disorder prediction 1 59 - -
Vvi7g0040 275 FunFam Histone H1 50 135 - -
Vvi7g0040 275 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi7g0040 275 MobiDBLite consensus disorder prediction 148 162 - -
Vvi7g0040 275 CDD H15 53 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi7g0040 275 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi7g0040 275 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0040 275 PRINTS Histone H5 signature 176 193 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0040 275 PRINTS Histone H5 signature 142 156 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0040 275 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0040 275 PRINTS Histone H5 signature 198 217 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi7g0040 275 Gene3D - 51 142 IPR036388 -
Vvi7g0040 275 MobiDBLite consensus disorder prediction 116 275 - -
Vvi7g0040 275 MobiDBLite consensus disorder prediction 35 49 - -
Vvi7g0040 275 PANTHER HISTONE H1 25 257 - -
Vvi7g0040 275 MobiDBLite consensus disorder prediction 250 275 - -
Vvi7g0040 275 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0040 Vvi-Chr7 411398 412312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0040 21 141 Single Myb Histone (SMH) Gene Family AT1G49950 30.709 1.07e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0040 K11275 - vvi:100247613 165.236