Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0038 ATGGCGGTCGAGCCACTCAACCGCCGATCTCAACCTTCCGGATCCGGCGGAGCCGTGATCAAGGAGGTGCACTTCAGAGGCGTCAGGAAGCGCCCATGGGGGCGGTTCGCTGCGGAGATACGCGATCCGTGGAAGAAGACGCGGAAGTGGCTAGGGACTTTCGATACCGCGGAGGAGGCCGCTAGGGCTTACGACGATGCGGCCAGGAGCCTCCGTGGGCCGAAGGCGAAGACTAACTTCGGCGACGGAGGACTCTCCTTCGCCTCCGCCGAGGCTCCTGTGGCCGGCGCCTCGGAGTTGTTTGGAAAGGGTCTGCAGCAGCATTGGCTGCAGCCGTCATTAACTGGCGGCGGCGACTCCGTCGCCGTTACGACGCGGTCGGAGTACACTGGATATAGGTTGGATGCGGTGGATTTGATGGTGAGTGAGGAGGAGAAGAAGATGAGGCAGGAGAAGGAGAAGAAGCCGTTCCTCTTCGACCTGAACCTCCCGGCGCCGCTCTTCTGA 507 0.6233 MAVEPLNRRSQPSGSGGAVIKEVHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARSLRGPKAKTNFGDGGLSFASAEAPVAGASELFGKGLQQHWLQPSLTGGGDSVAVTTRSEYTGYRLDAVDLMVSEEEKKMRQEKEKKPFLFDLNLPAPLF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0038 168 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vvi7g0038 168 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 122 - -
Vvi7g0038 168 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vvi7g0038 168 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Vvi7g0038 168 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vvi7g0038 168 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vvi7g0038 168 Coils Coil 134 154 - -
Vvi7g0038 168 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vvi7g0038 168 CDD AP2 24 80 IPR001471 GO:0003700|GO:0006355
Vvi7g0038 168 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Vvi7g0038 168 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0038 Vvi-Chr7 385929 386435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0038 20 80 AP2-EREBP Transcription Factor Family AT1G50640 86.885 4.91e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g0038 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0038 K09286 - vvi:100240970 327.02