Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0033 ATGTCGAATCAGGTGGTGAAGGTGAGGAGAGAGACGATTGCGGCATGCATGACATGTCCTCTCTGCAACAAGCTCTTGAGGGATGCTACCACCATTTCTGAATGTCTCCATACGTTTTGCAGAAAATGCATATATAACAAGATATCGGATGAGGAACTAGAATGCTGTCCAATATGCAACACAGATCTGGGTTGTGTTCCACTGGAGAAACTGAGGCCAGACCACAATTTGCAAGATGTAAGGGCCAAGATTTTCCCTTTCAAAAGAAGAAAGGTGAAGGCACCTGAAGTTGTGCTTCCAGTTACATTACCTGTTAAAAGAAAGGAGAGATCACTCTCATCCTTGGTGGTCAGCACCCCCAGAGTATCAACACAGACTACAATGACTGGAAGAAGAACAAAGTCTGTTGCAAGAAAGGCTACTGCTTTAAGAGGTTCCGGTTTTTCAATTGAGAAGCTCATTAAAAAGGAGGAAGACTCAGTGGGAGAGCGTCCAGCGAGCTCAAGCTCACCTGAGACTCTAAATAAATTCACTCAGAACATAAGGCAGAATTCACCCTCAGCAGAGCCATCTATCCACTCCACACCCAATAAAGAAACAGAGAATGGTGCTGAATCATGGGAAGGGAAATTTGATCTCTGGAAACCTTTAAATTGTTTGGTGGAAGTTGCAAATAGGACTAAGTCTCTTAAGTTTAACTCACAAGGGTCTGCTGTTAAATCGGAACCTATGCATGTTCCTGATGGTGAATCGCAAGTGCGCAAAACCAAAGTTAAGGAACATGGACGTAAATCTAAAGTTCAAGATGAAAAAATAAGCACCACTCCTGTCTCTGCAGAGTCAGTTAAACCTAAAAAGTTGTGCAGGGTTCGCCGAAGAAGGGCAGCCGCTTTTGGGGAGCTAGGCATTTCACCCCAAGCTGTGCTAAATGCTGTCAATAACCATAAAAGAAGAACTGGGTCAATTTGGTTCTCTTTAGTAGCTTCTGAAGACCAGGAAGGGGATGCATCATTGCCACAGATATCTTCGAATTTCTTAAGAATAAAGGATGTGAATGTACCTGTATCTTTTATCCAAAAGTACCTGATGAGGAAACTAGATCTTACTAGTGAAACTGAGGTTGAGATCAAATGCATGGGTCAACCAGTCCTCCCTACATTGCAGCTGCATAATTTAGTTGATTTATGGCTACAAACAGCATCAACATCACAAAGGGTACCGGCATCGATCGGCTCCTCCGGCAAGGAGTTCGTGATGGTGCTGGCTTATGCTCGAAGGCTCCTAGACCCCTAA 1293 0.4377 MSNQVVKVRRETIAACMTCPLCNKLLRDATTISECLHTFCRKCIYNKISDEELECCPICNTDLGCVPLEKLRPDHNLQDVRAKIFPFKRRKVKAPEVVLPVTLPVKRKERSLSSLVVSTPRVSTQTTMTGRRTKSVARKATALRGSGFSIEKLIKKEEDSVGERPASSSSPETLNKFTQNIRQNSPSAEPSIHSTPNKETENGAESWEGKFDLWKPLNCLVEVANRTKSLKFNSQGSAVKSEPMHVPDGESQVRKTKVKEHGRKSKVQDEKISTTPVSAESVKPKKLCRVRRRRAAAFGELGISPQAVLNAVNNHKRRTGSIWFSLVASEDQEGDASLPQISSNFLRIKDVNVPVSFIQKYLMRKLDLTSETEVEIKCMGQPVLPTLQLHNLVDLWLQTASTSQRVPASIGSSGKEFVMVLAYARRLLDP* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0033 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vvi7g0033 430 MobiDBLite consensus disorder prediction 154 205 - -
Vvi7g0033 430 SUPERFAMILY RING/U-box 14 83 - -
Vvi7g0033 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Vvi7g0033 430 MobiDBLite consensus disorder prediction 164 202 - -
Vvi7g0033 430 MobiDBLite consensus disorder prediction 116 134 - -
Vvi7g0033 430 MobiDBLite consensus disorder prediction 234 278 - -
Vvi7g0033 430 MobiDBLite consensus disorder prediction 247 270 - -
Vvi7g0033 430 SMART ring_2 19 59 IPR001841 -
Vvi7g0033 430 MobiDBLite consensus disorder prediction 116 137 - -
Vvi7g0033 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Vvi7g0033 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 426 IPR044807 GO:0004842
Vvi7g0033 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vvi7g0033 430 CDD RING-HC_PCGF 17 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0033 Vvi-Chr7 344566 357668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0033 2 349 C3H Transcription Factor Family AT2G30580 54.571 7.41e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0033 K16277 - vvi:100264728 854.358