Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0016 ATGGAAGTTGCCCGGAAAATGGCAACCATGCACGGCGAGGAGCGGGAAAAGCCCGACCTGAACTTGGAGGCGACGGAGCTCCGGCTGGGGCTGCCGGGAGGAAGTGAAGGAAGTGAGGTGGTGAGGAAGAGAGGGTTTTCGGAAACTGTGGATTTGAAGCTCAATCTGTCCGGGAAAGAAGCGGGTGTTGATGACAACAAAGTGAAGAGTCTGCAGAAGGAGAAGAGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTTGGCCGGGCAGAAGGGCGGCAGCGAGGAAGGGGAGAAGGTGAGCTGCAACGCAGCCTTTGTGAAGGTTAGCATGGACGGAGCGCCGTATCTGCGTAAGGTTGACTTGAAGATGTACACTAGTTATCAGGAGCTGTCCAATGCCTTGGGCAACATGTTCAGCTCCTTCACTATTGGGAATTATGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAATGGTTTTGATCATGTTCCAACATACGAAGACAAAGATGGGGATTGGATGCTCGTTGGAGATGTCCCATGGGAGATGTTTGTGGATTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCGCACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAA 735 0.517 MEVARKMATMHGEEREKPDLNLEATELRLGLPGGSEGSEVVRKRGFSETVDLKLNLSGKEAGVDDNKVKSLQKEKSKSLLPCGNDPARPPAKAQVVGWPPVRSFRKNMLAGQKGGSEEGEKVSCNAAFVKVSMDGAPYLRKVDLKMYTSYQELSNALGNMFSSFTIGNYGSQGMKDFMNESKLMDLLNGFDHVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGKEAIGLAPRAMEKCKNRS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0016 244 Gene3D - 121 238 - -
Vvi7g0016 244 MobiDBLite consensus disorder prediction 1 22 - -
Vvi7g0016 244 FunFam Auxin-responsive protein 121 236 - -
Vvi7g0016 244 ProSiteProfiles PB1 domain profile. 126 226 IPR000270 GO:0005515
Vvi7g0016 244 SUPERFAMILY CAD & PB1 domains 125 225 - -
Vvi7g0016 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 231 IPR003311 GO:0005634|GO:0006355
Vvi7g0016 244 Pfam AUX/IAA family 25 235 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0016 Vvi-Chr7 180388 182635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0016 118 234 B3 DNA Binding Superfamily AT4G23980 27.350 3.71e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi7g0016 AUX_IAA 9.6e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0016 K14484 - vvi:100259693 489.96