LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g0015	ATGGAGAAGCCAGTGGTTTACGATAACGGACTTAATCTTGAGGCGACCGAGCTAAGACTAGGGTTACCGGGGACCAATGAGCCTGAGAAACAATCATCTACTAGTGTTAGGAGCAAAAAGAGAGCATCGCCGGAGATGGCCGAGGAGACTAGGTCTAAGAGCAGCTCTTGTATATCCGATGCCGACGACGACGCCCCTCCACCAAAAGCACAAGTGGTGGGGTGGCCGCCGGTCCGATCATACCGGAAAAACAGCTTCCAACAGAGGAAAGGGGAAGCCGAGGGGGCCGGAATGTACGTGAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATCGATCTCAAGGTTTACAAGAGCTACCCGGAGCTCCTCAACGCCTTGGAGAATATGTTCAAGTTCAGAATAGGTGAGTACTCAGAGAGGGAAGGCTACAATGGATCTGACTATACCCCTGCTTATGAAGATAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGGAGATGTTCATCTCATCCTGTAAGAGGCTAAGAATCATGAAGGGATCGGAATGA	561	0.5027	MEKPVVYDNGLNLEATELRLGLPGTNEPEKQSSTSVRSKKRASPEMAEETRSKSSSCISDADDDAPPPKAQVVGWPPVRSYRKNSFQQRKGEAEGAGMYVKVSMDGAPYLRKIDLKVYKSYPELLNALENMFKFRIGEYSEREGYNGSDYTPAYEDKDGDWMLVGDVPWEMFISSCKRLRIMKGSE*	187

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g0015	186	MobiDBLite	consensus disorder prediction	33	48	-	-
	Vvi7g0015	186	SUPERFAMILY	CAD & PB1 domains	90	183	-	-
	Vvi7g0015	186	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	11	186	IPR003311	GO:0005634\|GO:0006355
	Vvi7g0015	186	FunFam	Auxin-responsive protein	92	186	-	-
	Vvi7g0015	186	Pfam	AUX/IAA family	49	186	IPR033389	-
	Vvi7g0015	186	MobiDBLite	consensus disorder prediction	1	76	-	-
	Vvi7g0015	186	ProSiteProfiles	PB1 domain profile.	97	184	IPR000270	GO:0005515
	Vvi7g0015	186	Gene3D	-	91	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g0015	Vvi-Chr7	165826	166595	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g0015	100	186	B3 DNA Binding Superfamily	AT2G46530	37.931	9.75e-11	58.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX/IAA	Vvi7g0015		AUX_IAA	8.2e-56	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g0015	K14484		-	vvi:100264878	359.377