Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0012 ATGGCGAGCAATCCCTCGGAAGCTCCAGCGGACGATTTTCTCGAGCAAATCCTCGGAATTCCCACCTACCCCGCAGCTGACCCTAATTTGGCTGCTAATGACGTGAATTTGGCCGCTCCTATGGTGCTTCAGCTCGGCTCCGGCGAAGGCTCTGGCCACATCGCCGGCGGGTACCAGGGAACCATGTTTCCGTTAGGGTTGAGGTTGGAGCAGGGAAAGAGCAGCTTTCTGAAGCCCGAAGACGCGTCTGGCAGTGGCAAGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAATGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCTCCTGCAATTCGCCCAAGGGTGCGGGCGAGACGTGGACAGGCCACAGATCCACACAGCATTGCTGAGCGGTTACGCAGAGAAAGAATAGCAGAGAGAATTAGAGCACTGCAGGAACTAGTTCCTAGTGTCAACAAGACGGATAGAGCTGCAATGCTTGATGAAATTGTGGATTATGTGAAATTCCTAAGGCTCCAAGTAAAGGTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGGAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCAAACGACGGTACAGAACGACAAGTTGCTAAGCTCATGGAAGAGAATGTTGGGGCTGCAATGCAGTTCCTTCAGTCCAAGGCACTCTGCATCATGCCCATCTCTCTCGCTTCAGCCATTTACCACTCTCAGCAGCCGGACACAACTCCACTGATCAAGCCCCAGACAAATCCCCCATCGTAA 870 0.5241 MASNPSEAPADDFLEQILGIPTYPAADPNLAANDVNLAAPMVLQLGSGEGSGHIAGGYQGTMFPLGLRLEQGKSSFLKPEDASGSGKRFREEVIDGRASTVKNAFHGQPMQATVAAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLASVEEEASEGGRNEPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHSQQPDTTPLIKPQTNPPS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0012 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Vvi7g0012 289 FunFam Basic helix-loop-helix transcription factor 128 190 - -
Vvi7g0012 289 Gene3D - 128 190 IPR036638 GO:0046983
Vvi7g0012 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 192 IPR036638 GO:0046983
Vvi7g0012 289 Pfam Helix-loop-helix DNA-binding domain 138 182 IPR011598 GO:0046983
Vvi7g0012 289 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 81 268 - -
Vvi7g0012 289 SMART finulus 139 188 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0012 Vvi-Chr7 138291 144285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0012 58 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.872 2.24e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g0012 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0012 - - vvi:100247732 531.176