Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0008 ATGACCTTCACTCTAAAGAAGTGTGCCATCTGGAATTTACAGGAGGAAGCAGGAAGACTTAAATTTGTGTTCATTGAAAATGATGGTGTTGATGAGCACATGATTTGGCTGATAGAATTGAAGAACCTATTTTCCAGGCAACTACCAGATGTGCCAAGGGAATACATTGTTCGTCTTGTCCTGGACATAAACCATAAATCCATAATGATTATCAGACGGAATCAGGTCGTTGGCGGTATCACATACCGTCCATATTTGAGCCAACAGTTTGTGGAGATAGCCTTTGGTGCAATTATGGCTGATGAGCAAATAAAAGGCTGTGGTGCTAGACTAATGAACCATTTAAAACAACATGCACGCAATATGGATGGGGTGACACATCTTCTAACATGCGCAGATAACAATGCTGTTGATTATTTTATCAAACAGGGTTTTAAAAAGATCACTTTGGAGAAAGAGCGATGGCAAGGATATATCAAAGCCTATGATGGAGGAATCCTAATGGAATGTGAACTTCATCCAAAGTTTCCATATTCTTACTTAACGACTATGATTAGCCATCAGAGGCAGGCTATCAATGAAAGGATAAGAGAAGTATCCAACTGTGAAATTGTCTACCCTGGCATTGATTTTCAGAAGGGAGATGACGGTGTTCCTGCAAGGCCCATCAAATTAGAGGATATTCCTGGTTTGAAGGATGCAGGCTGGACCCCTGATCAATATGGCCATTCTCGGTTTAAAACATCGAATGCTTCTGCAGACACTGTATCAAATCGAGAACCCTTAACGACATTCATGCGCTCGCTTTTGAAGCAAATTTATGACCATCCAGATGCTTGGCCTTTCAAGGAACCGGTTGACTCTGATAACGCGCCCGGCTACTATGACATAATCAAAGATCCCATGGGTGAGAACTGCATTATCAATATTAATTCTTCATTCTAA 945 0.4095 MTFTLKKCAIWNLQEEAGRLKFVFIENDGVDEHMIWLIELKNLFSRQLPDVPREYIVRLVLDINHKSIMIIRRNQVVGGITYRPYLSQQFVEIAFGAIMADEQIKGCGARLMNHLKQHARNMDGVTHLLTCADNNAVDYFIKQGFKKITLEKERWQGYIKAYDGGILMECELHPKFPYSYLTTMISHQRQAINERIREVSNCEIVYPGIDFQKGDDGVPARPIKLEDIPGLKDAGWTPDQYGHSRFKTSNASADTVSNREPLTTFMRSLLKQIYDHPDAWPFKEPVDSDNAPGYYDIIKDPMGENCIININSSF* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0008 314 PRINTS Bromodomain signature 277 290 IPR001487 GO:0005515
Vvi7g0008 314 PRINTS Bromodomain signature 291 307 IPR001487 GO:0005515
Vvi7g0008 314 Pfam Acetyltransferase (GNAT) domain 72 153 IPR000182 GO:0016747
Vvi7g0008 314 PANTHER GH11602P 13 302 IPR037800 GO:0004402
Vvi7g0008 314 ProSiteProfiles Bromodomain profile. 274 314 IPR001487 GO:0005515
Vvi7g0008 314 Gene3D - 252 303 IPR036427 GO:0005515
Vvi7g0008 314 SUPERFAMILY Bromodomain 252 303 IPR036427 GO:0005515
Vvi7g0008 314 Gene3D - 16 179 - -
Vvi7g0008 314 CDD NAT_SF 67 128 - -
Vvi7g0008 314 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 25 173 IPR000182 GO:0016747
Vvi7g0008 314 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 25 176 IPR016181 -
Vvi7g0008 314 Pfam Bromodomain 267 302 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0008 Vvi-Chr7 93051 109896 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vvi7g0008 Acetyltransf_10 8.1e-07 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0008 K06062 - vvi:104879752 598.971