Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0007 ATGGACACTCACTCTACCCACCCAACAGCCCCAGTACGCTCTCGCAGCTCTCAATCCCCTTCACACTCTGCCTCCGCCTCCGCTTCCGCCTCCGCCACTTCCTCAATCCACAAGCGCAAGCTCACCTCTGACGACCACGCGCCACCGTTTTCCGCCGACATTACCTCCAATGACGATCTCGATAGCATCAGCGCCCGCGCCGGGGGCCCCGGCTCCGATTCCGACGATGACTCCGAGGAGGACGCTGTCGTCGACGACGAAGAGGACGACTTTGATAACGAATCTATGCGGACGTTTACCACTGCGCGGCTGGACAACAGTGCGACGGCTTCAGCGGCAGTCCGTAATACCAAGATCAAGCCGGAGAATTCGACGGTGAAAGTGGAATCGTCGGAAATTGGGAAGGACGGAGGTTCTTCGGCTGCGGCGCCGGTTGGAACTAGTTCTGTGCCGGCTATTGTGGTGAAGGAGGACGCCACGAAGATATTCACAGAAAATATGCAGACTAGTGGGACTTATTGCGCCAGAGAAGAGAGTTTGAAAAGGGAGGAGGAAGCAGGAAGGCTCAAATTTGTGTGCCTTGGAAATGATGGTGTTGATCAGCACATGATTTGGTTGATAGGATTGAAGAATGTATTTGCCAGACAACTACCAAATATGCCCAAGGAATACATCGTTCGTCTTGTTATGGACCGAAGCCACAAGTCTGTAATGGTTATCAGACGTAACCAGGTTGTTGGTGGCATTACATACCGCCCATATGTCAGCCAAAAATTTGGAGAGATAGCCTTTTGTGCTATCACAGCTGATGAGCAAGTAAAAGGCTATGGCACCAGATTGATGAATCATTTAAAACAGTATGCACGTGATATTGATGGGTTGACTCATTTTCTGACGTATGCTGATAACAACGCTGTTGGTTATTTTATCAAACAGGGTTTTACAAAAGAAATTTCCTTGGAGAAAGATAGATGGCAAGGGTACATCAAAGATTATGATGGAGGAATCCTTATGGAATGCAAAATTGATCCAAAGCTTCCATACACTGATCTGTCAACTATGATTCGTCGTCAGAGGCAGGCAATTGATGAAAAGATAAGGCAACTCTCGAACTGTCATATTGTCTACACAGGAATTGATTTTCAGAAGAATGAAGTTGGCATTCCAAGAAGGATCATCAAAGTTGAGGAGATTCCTGGCTTGAAGGAGGCTGGGTGGACTCCTGATCAATATGGCCATTCTCGATTTAGAACAACAAGTGCCTCTGCGGATAGAGCATCGAATAGAAAATCCCTAACTGCATTCATGCGCTCACTTTTAAAGTTAATGCATGATCATCCTGATGCTTGGCCGTTCAAGGAACCAGTTGATGCACGTGATGTGCCTGATTATTATGACATCATCAAAGATCCTATGGATTTGAAGACAATGTCAAAGAGGGTGGAGTCAGAGCAATACTATATCACATTGGAGATGTTTCTTACCGATGTCAGGACAATGTTCAAAAATGCCCGCACCTACAACTCTCCTGATACAATTTATTATAAATGCGCCACCAGGCTGGAATCCTTTTTCTCAGGAAAAGTTCAAGCAGGCCTCCAATCTAGTAGCAAAATTCAGCAGTAA 1626 0.4656 MDTHSTHPTAPVRSRSSQSPSHSASASASASATSSIHKRKLTSDDHAPPFSADITSNDDLDSISARAGGPGSDSDDDSEEDAVVDDEEDDFDNESMRTFTTARLDNSATASAAVRNTKIKPENSTVKVESSEIGKDGGSSAAAPVGTSSVPAIVVKEDATKIFTENMQTSGTYCAREESLKREEEAGRLKFVCLGNDGVDQHMIWLIGLKNVFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNQVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDIDGLTHFLTYADNNAVGYFIKQGFTKEISLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRQLSNCHIVYTGIDFQKNEVGIPRRIIKVEEIPGLKEAGWTPDQYGHSRFRTTSASADRASNRKSLTAFMRSLLKLMHDHPDAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYITLEMFLTDVRTMFKNARTYNSPDTIYYKCATRLESFFSGKVQAGLQSSSKIQQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0007 541 ProSiteProfiles Bromodomain profile. 444 515 IPR001487 GO:0005515
Vvi7g0007 541 MobiDBLite consensus disorder prediction 1 37 - -
Vvi7g0007 541 SMART bromo_6 425 534 IPR001487 GO:0005515
Vvi7g0007 541 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 210 343 IPR016181 -
Vvi7g0007 541 Gene3D - 414 539 IPR036427 GO:0005515
Vvi7g0007 541 CDD NAT_SF 236 290 - -
Vvi7g0007 541 PANTHER GH11602P 14 537 IPR037800 GO:0004402
Vvi7g0007 541 MobiDBLite consensus disorder prediction 74 93 - -
Vvi7g0007 541 ProSitePatterns Bromodomain signature. 449 507 IPR018359 -
Vvi7g0007 541 MobiDBLite consensus disorder prediction 1 95 - -
Vvi7g0007 541 Pfam Bromodomain 438 519 IPR001487 GO:0005515
Vvi7g0007 541 Pfam Acetyltransferase (GNAT) family 236 314 IPR000182 GO:0016747
Vvi7g0007 541 Gene3D - 185 349 - -
Vvi7g0007 541 PRINTS Bromodomain signature 461 477 IPR001487 GO:0005515
Vvi7g0007 541 PRINTS Bromodomain signature 447 460 IPR001487 GO:0005515
Vvi7g0007 541 PRINTS Bromodomain signature 496 515 IPR001487 GO:0005515
Vvi7g0007 541 MobiDBLite consensus disorder prediction 122 145 - -
Vvi7g0007 541 SUPERFAMILY Bromodomain 415 530 IPR036427 GO:0005515
Vvi7g0007 541 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 196 343 IPR000182 GO:0016747
Vvi7g0007 541 CDD Bromo_gcn5_like 431 531 - -
Vvi7g0007 541 FunFam Histone acetyltransferase KAT2A 186 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0007 Vvi-Chr7 78089 88566 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vvi7g0007 Bromodomain 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0007 K06062 - vvi:100252806 1028.85