Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1483 ATGGACCTTCCGATCCGCAAGTTTCGCCTCCTTCTCCTTGCCTGGCTCCATCCACATCGTTCCGGCCCTGTGTCCTTTGTGAGGCGCTTCTCATACAAGGATATAAAGAGGGCAACGGATGGTTTCCGCAGAATCAGTTATAGCAATTCTTATGGGGTTGCTTATAAAGCCATATTTCAGGATGGTCTTGTTGCCTTGGTAAAAGAAGTAGGAGATTTTAATCAAGGGAAGGACATCTTCTATGGGGAAGTGCAACGATTGGGCCGATTGCATCATCGGCACCTTCTTGCACTTAGAGGATTTTCCACAGGACGTAAAAGATTCCTAGTATTTGAAAGCATAGAAAATGGAAGCCTGAAAGAGCATCTTAATGATCCTCTGAAGACTCCATTGAATTGGAGAACGAGGCTACAAATAGCTATTGGTGTAGCAGCTGCACTGGAATATTTGCAACTCTTCAATGAACCACCAATATATCATGTCTCCATCAGGTCTAGTAATATCCTATTAGATGAGAACTTCACTGCAAAGCTAGCTGACGTTGGTGTTCTTAGTTCTGGTGGAAATCATGCCACTGCACAAAATGTCTCATGTTCAAAAGATTGCACAGGTCAGGAAGGTAATAACATAATCTTCCAGCTTGGAGTTCTAATTCTGGAGCTAATAACTGGTCAATCATCAGAGAAGGGAGGTGTTGATTTAATTCAATGGGTCCAAGAATCTCGGTTAAGCAGATCCATGCAAAAGATGATAGACCCAGATCTTGGAAACAGTTATGATTCGAGAGAGCTCAACAATCTTTTAGCTGTTGCAAGACTGTGTATTAAATCTGGGGAAAAGCCAACATTTTCTATACCACAAATATTTCGGTATCTCCAGAAGAAGGTGGACATTCCACGTGATTAG 906 0.4227 MDLPIRKFRLLLLAWLHPHRSGPVSFVRRFSYKDIKRATDGFRRISYSNSYGVAYKAIFQDGLVALVKEVGDFNQGKDIFYGEVQRLGRLHHRHLLALRGFSTGRKRFLVFESIENGSLKEHLNDPLKTPLNWRTRLQIAIGVAAALEYLQLFNEPPIYHVSIRSSNILLDENFTAKLADVGVLSSGGNHATAQNVSCSKDCTGQEGNNIIFQLGVLILELITGQSSEKGGVDLIQWVQESRLSRSMQKMIDPDLGNSYDSRELNNLLAVARLCIKSGEKPTFSIPQIFRYLQKKVDIPRD* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1483 301 FunFam probable receptor-like protein kinase At1g49730 211 300 - -
Vvi6g1483 301 PANTHER OS01G0253100 PROTEIN 25 296 - -
Vvi6g1483 301 ProSiteProfiles Protein kinase domain profile. 40 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1483 301 SUPERFAMILY Protein kinase-like (PK-like) 23 269 IPR011009 -
Vvi6g1483 301 Gene3D Transferase(Phosphotransferase) domain 1 211 300 - -
Vvi6g1483 301 FunFam Protein kinase superfamily protein 114 207 - -
Vvi6g1483 301 FunFam Protein kinase superfamily protein 16 112 - -
Vvi6g1483 301 Gene3D Transferase(Phosphotransferase) domain 1 114 207 - -
Vvi6g1483 301 Pfam Protein tyrosine and serine/threonine kinase 67 187 IPR001245 GO:0004672|GO:0006468
Vvi6g1483 301 Gene3D Phosphorylase Kinase; domain 1 19 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1483 Vvi-Chr6 21445097 21449247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1483 28 297 Receptor kinase-like Gene Family AT3G19300 39.519 7.59e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vvi6g1483 PK_Tyr_Ser-Thr 6.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1483 - - vvi:100262216 590.497