Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1472 ATGAACCCTTCTTCTCAGCCGCCTCACCAGATCATGCACCCTCCCAAGCGCCACCTCCCCTTTCCGCCCGCCCGCCCGCCCTTCGTCCCCTCGCCCGGGGACTACCACCGCTTCTCCTCCTCCGGCCGCGTCCCCGATCACGAGGCCGACGAGGCCGTGGTGGTAAAATCTCCGCAATTAAAGCGGAAAAGTGAACCCGATTATGAAGCTGAGTCTAGCGAGTGGACTGCTGTTCCTGGTTTTACTGAAGTAGTCAACAGTCCTGTCCAGACACCTGTATCAGGAAAAGGAGGAAAGGCACAGAAAACATCAAGGATTACCAAGTGCAGCAGGTCTGGACCTCAAACTCCAGTATCTAATGCTGGTTCTCCTGGAAATAATCTTACTCCAGTAGGTCCCTGTCGTTATGATAGCTCACTAGGTCTCTTGACAAAGAAGTTCATTAATTTGATTAAACATGCAGAAGATGGTATTCTTGATCTAAATAAAGCTGCCGACACTTTAGAGGTACAGAAGAGGCGTATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATTGAGAAGAAGTTGAAGAATAGAATTCAGTGGAAGGGACTTGATGTCTCGAGGCCAGGAGAGGTTGATGAAAATGTTACTAGTTTACAGGAAGAAGTTGAAAACCTTTCTATTCAGGAGCGCAGATTAGATGCACAAATAAGAGATATGCAAGAAAGATTGAGGGACCTGAGTGAAGATGAAAACAATCAAAAGTGGCTTTTTGTCACTGAAGAAGACATCAAGGGGTTACCCTGCTTCCAGAAAGAAACCTTGATAGCAATTAAAGCCCCACATGGCACCACACTAGAAGTCCCAGATCCTGATGAGGCTGTTGATTATCCTCAGAGGAGATACAGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAGTTTTCCATCAAGTTCAGGATATAATGAGGACCCAACAGCAGCAATGGTAACAGAAGAGAGCAGAGGGAAGGAGATTGAAATACAGGGACAAGATGCTCATAGAATGTCCTCTGATCTTAATGCGTCACAAGATTTTGTGAGTGGGATAATGAAGATCGTTCCATCAGATGTTGATAGTGATGCAGATTACTGGCTTTTGTCAGATGCCGATGTGAGCATCACAGACATGTGGAGGACAGAGCCTGGAGTTGAATGGAATGAGTTAGATGCTCTTAATGATGACTATGCAATGGCTAATGTCAGCACACCACAGCCTCAAACTCCACCATCTAGTGCTGCGGAAGTGCCTCCTGCTGCCAATACTCCAGGGAGGTGA 1374 0.4607 MNPSSQPPHQIMHPPKRHLPFPPARPPFVPSPGDYHRFSSSGRVPDHEADEAVVVKSPQLKRKSEPDYEAESSEWTAVPGFTEVVNSPVQTPVSGKGGKAQKTSRITKCSRSGPQTPVSNAGSPGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEVDENVTSLQEEVENLSIQERRLDAQIRDMQERLRDLSEDENNQKWLFVTEEDIKGLPCFQKETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSSMGPIDVYLVSQFEEKFEEINGLEAPPSFPSSSGYNEDPTAAMVTEESRGKEIEIQGQDAHRMSSDLNASQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTEPGVEWNELDALNDDYAMANVSTPQPQTPPSSAAEVPPAANTPGR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1472 457 Gene3D - 207 317 - -
Vvi6g1472 457 MobiDBLite consensus disorder prediction 1 74 - -
Vvi6g1472 457 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Vvi6g1472 457 Coils Coil 213 247 - -
Vvi6g1472 457 SUPERFAMILY "Winged helix" DNA-binding domain 135 198 IPR036390 -
Vvi6g1472 457 PANTHER TRANSCRIPTION FACTOR E2F 69 416 IPR015633 GO:0000978|GO:0006357
Vvi6g1472 457 MobiDBLite consensus disorder prediction 86 127 - -
Vvi6g1472 457 MobiDBLite consensus disorder prediction 40 70 - -
Vvi6g1472 457 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Vvi6g1472 457 Gene3D - 130 202 IPR036388 -
Vvi6g1472 457 CDD E2F_DD 211 317 IPR032198 GO:0046983
Vvi6g1472 457 MobiDBLite consensus disorder prediction 86 129 - -
Vvi6g1472 457 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Vvi6g1472 457 FunFam E2F transcription factor 1 129 202 - -
Vvi6g1472 457 MobiDBLite consensus disorder prediction 1 30 - -
Vvi6g1472 457 SUPERFAMILY E2F-DP heterodimerization region 212 317 IPR037241 -
Vvi6g1472 457 MobiDBLite consensus disorder prediction 429 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1472 Vvi-Chr6 21270254 21279641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1472 18 455 E2F-DP Transcription Factor Family AT5G22220 56.926 2.32e-163 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vvi6g1472 E2F_CC-MB 9.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1472 K06620 - vvi:100245057 883.248