Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1470 ATGTCTTCCAACAAGAAAGAGCTGCTCAGAAGCATATTCACACCCAATAGAGGGTGTGGGTGTGGAAGGCCAAAGCTCTCAGACATAGTCAACCCAACACCAAGGCCCAGAACCTCCCATTTCCAGAAGCCGAAACCTTGTCCTTCTTCATCAAGTTCTTGGGAGAGAGGTGATGGAGACCACACTTCCACCACCACATTCTCTCTCAATATCGAAACTTGTTCAAATCCTTCGGAGCCTGAAAATGATCCCAAGTGCAAGAAGATGATCAGCCCAAGCCAGAAGCTCAGCGAAAGCATCGCTGTTGTTAAGGATTCCAATGACCCATACCATGATTTTCGACAATCTATGCTTCAAATGATCCTGGAGAAACAGATTTTCTCAAAGGGGGATCTTCAGGAGCTCCTCAACTGCTTCCTTCAGCTGAATTCTCCTTGTCACCACGATGTTATTATCCAAGCTTTCATGGAGATCTGGAATGGGGTCATCTCAGAAAGGCTGTCACACCAAGTTTAG 516 0.4632 MSSNKKELLRSIFTPNRGCGCGRPKLSDIVNPTPRPRTSHFQKPKPCPSSSSSWERGDGDHTSTTTFSLNIETCSNPSEPENDPKCKKMISPSQKLSESIAVVKDSNDPYHDFRQSMLQMILEKQIFSKGDLQELLNCFLQLNSPCHHDVIIQAFMEIWNGVISERLSHQV* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1470 171 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 53 163 IPR038933 GO:0045892
Vvi6g1470 171 MobiDBLite consensus disorder prediction 32 80 - -
Vvi6g1470 171 Pfam Transcriptional repressor, ovate 106 161 IPR006458 -
Vvi6g1470 171 ProSiteProfiles OVATE domain profile. 102 161 IPR006458 -
Vvi6g1470 171 NCBIfam uncharacterized plant-specific domain TIGR01568 100 160 IPR006458 -
Vvi6g1470 171 MobiDBLite consensus disorder prediction 14 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1470 Vvi-Chr6 21250519 21251034 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vvi6g1470 Ovate 7.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1470 - - vvi:104879725 347.436