Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1469 ATGAAGCTCCCTTCACTCTTCAAGAAAAAAGAAGTACAATGTCTAAGCAAATGCATCCCTCCAATATTTGCATTCCATAAGACTGTTTCTTCCCAAACCACCGCCGGCAATGTTAACAACTTCAGTTCAAGATTATCTGATGCCACCGAGTTGATAGCCGGGGAGAGTGCATGGCCGTGTTCCGAGGAGCGTCAAAGGCAGGCTTTGGACAAGGCTTTTCAGGCAATGAGATCAGAGAGGCTGTTTCTGGAGCTGAATGACACAAGTTCAATCTCAGTAGGAGATTCCAGGTTCCCATTCCAAGAGTTCGTTGTGGTGGCTCTTCAGTCCAATGATCCATACGTGAATTTTCGGATTTCAATGGAGGAAATGATTGAGGATTATGGGTTGCAGGCTAACGGGCTAAAGGATTGGAATTATCTGGAGGCTTTGCTTGCCTGGTACTTGAGGATGAATAGCAAGACCAATCATGGTTTTATAGTTGCTGCATTTGTTGATATGATTGTTGCTGTTGGTATATTGTAG 525 0.4419 MKLPSLFKKKEVQCLSKCIPPIFAFHKTVSSQTTAGNVNNFSSRLSDATELIAGESAWPCSEERQRQALDKAFQAMRSERLFLELNDTSSISVGDSRFPFQEFVVVALQSNDPYVNFRISMEEMIEDYGLQANGLKDWNYLEALLAWYLRMNSKTNHGFIVAAFVDMIVAVGIL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1469 174 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 41 168 IPR038933 GO:0045892
Vvi6g1469 174 Pfam Transcriptional repressor, ovate 110 170 IPR006458 -
Vvi6g1469 174 NCBIfam uncharacterized plant-specific domain TIGR01568 104 170 IPR006458 -
Vvi6g1469 174 ProSiteProfiles OVATE domain profile. 106 170 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1469 Vvi-Chr6 21240457 21240981 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vvi6g1469 Ovate 5.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1469 - - vvi:104879726 348.591